RetrogeneDB ID: | retro_mluc_1642 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429876:958114..959340(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC2 | ||
Ensembl ID: | ENSMLUG00000008853 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.01 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPL |
ALDEGDIALLKTYGQS.YSRQIKQVEDDIQQLLKK.NELTGIKES.TGLAPPALWDLAADKQTLQSEQPL | |
Retrocopy | ALDEGDIALLKTYGQSIYSRQIKQVEDDIQQLLKKMNELTGIKESGTGLAPPALWDLAADKQTLQSEQPL |
Parental | QVASVRCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTV |
QVA..RCTKIINAD.EDPKYI.NVK.FAKFVVDLSDQVAPT.IEEGMRVGVDRNKYQIHIPLPPKIDPTV | |
Retrocopy | QVA--RCTKIINADPEDPKYIVNVKPFAKFVVDLSDQVAPTAIEEGMRVGVDRNKYQIHIPLPPKIDPTV |
Parental | TMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN |
TMMQVEEKPDVT.SDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN | |
Retrocopy | TMMQVEEKPDVT*SDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN |
Parental | RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLE |
RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKA.LIF.DEIDAIGG.R..DGAGGD.EVQRTMLE | |
Retrocopy | RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKARLIFLDEIDAIGGVR-SDGAGGDSEVQRTMLE |
Parental | LINQLDGFDPRGNIKVLMATNRPDTLDPALMR-PGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRF |
L.N.LDGFDPRGN.KVL.A.NRPDTLDPALMR..GRLDRK.E.SLPDLEGRTH.FKIHARSMSVERDIRF | |
Retrocopy | LTNRLDGFDPRGNVKVLLASNRPDTLDPALMR<AGRLDRKTESSLPDLEGRTHVFKIHARSMSVERDIRF |
Parental | ELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRYMTYN |
ELLA.LCPNSTGAEIRSVCTEAGMF.IR..RKIATEKD.LEAVNKV.KSYAKFSATPRY.TYN | |
Retrocopy | ELLAQLCPNSTGAEIRSVCTEAGMFVIRPWRKIATEKDSLEAVNKVTKSYAKFSATPRYRTYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000005729 | 1 retrocopy | |
Homo sapiens | ENSG00000161057 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009167 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008853 | 1 retrocopy |
retro_mluc_1642 ,
|
Macaca mulatta | ENSMMUG00000003432 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017238 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018268 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009274 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005164 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017883 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019553 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000666 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000008921 | 1 retrocopy |