Parental gene:

PSMC2, ENSG00000161057

Aliases:PSMC2, MSS1, Nbla10058, S7
Description:proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Source:HGNC Symbol;Acc:9548]
Organism:Human (Homo sapiens)
Coordinates:7:102984700..103009842(+)


>ENSG00000161057
ATGCCGGATTACCTCGGTGCCGATCAGCGGAAGACCAAAGAGGATGAGAAGGACGACAAGCCCATCCGAGCTCTGGATGA
GGGGGATATTGCCTTGTTGAAAACTTATGGTCAGAGCACTTACTCTAGGCAGATCAAGCAAGTTGAAGATGACATTCAGC
AACTTCTCAAGAAAATTAATGAGCTCACTGGTATTAAAGAATCTGACACTGGCCTGGCCCCACCAGCACTCTGGGATTTG
GCTGCAGATAAGCAGACACTCCAGAGTGAACAGCCTTTACAGGTTGCCAGGTGTACAAAGATAATCAATGCTGATTCGGA
GGACCCAAAATACATTATCAACGTAAAGCAGTTTGCCAAGTTTGTGGTGGACCTTAGTGATCAGGTGGCACCTACTGACA
TTGAAGAAGGGATGAGAGTGGGCGTGGATAGAAATAAATATCAAATTCACATTCCATTGCCTCCTAAGATTGACCCAACA
GTTACCATGATGCAGGTGGAAGAGAAACCTGATGTCACATACAGTGATGTTGGTGGCTGTAAGGAACAGATTGAGAAACT
GCGAGAAGTAGTTGAAACCCCATTACTTCATCCAGAGAGGTTTGTGAACCTTGGCATTGAGCCTCCCAAGGGCGTGCTGC
TCTTTGGTCCACCCGGTACAGGCAAGACACTCTGTGCGCGGGCAGTTGCTAATCGGACTGATGCGTGCTTCATTCGAGTT
ATTGGATCTGAGCTTGTACAGAAATACGTCGGTGAGGGGGCTCGAATGGTTCGTGAACTCTTTGAAATGGCCAGAACAAA
AAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGCTATTGGAGGGGCTCGTTTTGATGATGGTGCTGGAGGTGACAATG
AAGTGCAGAGAACAATGTTGGAACTGATCAATCAGCTTGATGGTTTTGATCCTAGAGGCAATATTAAAGTGCTGATGGCC
ACTAACAGACCTGATACTTTGGATCCAGCACTGATGAGGCCAGGGAGATTGGATAGAAAAATTGAATTTAGCTTGCCCGA
TCTAGAGGGTCGGACCCACATATTTAAGATTCACGCTCGTTCAATGAGTGTTGAAAGAGATATCAGATTTGAACTGTTAG
CACGACTGTGTCCAAATAGCACTGGTGCTGAGATTAGAAGCGTCTGCACAGAGGCTGGTATGTTTGCCATCAGAGCACGG
CGAAAAATTGCTACCGAGAAGGATTTCTTGGAAGCTGTAAATAAGGTCATTAAGTCTTATGCCAAATTCAGTGCTACTCC
TCGTTACATGACATACAACTGA

Library Parental gene expression (RPM)
bodymap2_liver 80 .73 RPM
bodymap2_lung 42 .58 RPM
bodymap2_breast 80 .64 RPM
bodymap2_adipose 64 .82 RPM
bodymap2_adrenal 91 .72 RPM
bodymap2_skeletal_muscle 89 .79 RPM
bodymap2_thyroid 120 .71 RPM
bodymap2_prostate 66 .02 RPM
bodymap2_colon 67 .33 RPM
bodymap2_testis 108 .65 RPM
bodymap2_brain 81 .81 RPM
bodymap2_heart 54 .88 RPM
bodymap2_white_blood_cells 62 .25 RPM
bodymap2_lymph_node 56 .70 RPM
bodymap2_ovary 83 .68 RPM
bodymap2_kidney 87 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000005729 ortholog_one2one 1 retrogene
retro_etel_1316,
Gorilla gorilla ENSGGOG00000009167 ortholog_one2one 3 retrogenes
retro_ggor_1885, retro_ggor_2672, retro_ggor_2673,
Myotis lucifugus ENSMLUG00000008853 ortholog_one2one 1 retrogene
retro_mluc_1642,
Macaca mulatta ENSMMUG00000003432 ortholog_one2one 2 retrogenes
retro_mmul_1538, retro_mmul_2299,
Monodelphis domestica ENSMODG00000017238 ortholog_one2one 1 retrogene
retro_mdom_868,
Mustela putorius furo ENSMPUG00000018268 ortholog_one2one 3 retrogenes
retro_mputfur_1025, retro_mputfur_232, retro_mputfur_387,
Nomascus leucogenys ENSNLEG00000009274 ortholog_one2one 2 retrogenes
retro_nleu_1578, retro_nleu_2042,
Otolemur garnettii ENSOGAG00000005164 ortholog_one2one 2 retrogenes
retro_ogar_2198, retro_ogar_2309,
Pongo abelii ENSPPYG00000017883 ortholog_one2one 2 retrogenes
retro_pabe_2257, retro_pabe_2412,
Pan troglodytes ENSPTRG00000019553 ortholog_one2one 2 retrogenes
retro_ptro_1826, retro_ptro_2702,
Tarsius syrichta ENSTSYG00000000666 ortholog_one2one 4 retrogenes
retro_tsyr_1031, retro_tsyr_1272, retro_tsyr_1857, retro_tsyr_2178,
Vicugna pacos ENSVPAG00000008921 ortholog_one2one 1 retrogene
retro_vpac_44,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2705 90.17 93.53
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2. retro_hsap_3980 73.45 51.73
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Download FASTA sequences of all ENSG00000161057 retrocopies