RetrogeneDB ID: | retro_ogar_2309 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873610.1:6367078..6367909(-) | ||
Located in intron of: | ENSOGAG00000006344 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC2 | ||
Ensembl ID: | ENSOGAG00000005164 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Source:HGNC Symbol;Acc:9548] |
Percent Identity: | 81.23 % |
Parental protein coverage: | 63.59 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MPDYLGADQRKTKEDEKDDKPIRALDEGDIALLKTY-GQSTYSRQIKQVEDDIQQLLKKINELTGIKESD |
MPDY.GA.Q.KTKEDEKD..P......G.....K.....ST.SRQIKQVE.DIQQL..KINELTGIKESD | |
Retrocopy | MPDYPGANQWKTKEDEKDNNPSELWMRGTLSC*KLMVRESTQSRQIKQVEEDIQQLFRKINELTGIKESD |
Parental | TGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMR |
TGLAPPALWDLAADKQTLQSEQP.QVAR.TKIINADSEDPKYIIN.KQFAKFVVDLSDQVAPTDIEEGMR | |
Retrocopy | TGLAPPALWDLAADKQTLQSEQPSQVARYTKIINADSEDPKYIINMKQFAKFVVDLSDQVAPTDIEEGMR |
Parental | VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPP |
VGVD.NKYQIHI.LPPKIDPTVTM.QVEEKPDV.Y.DVGGCKEQ.EKL.EV.ET.LLH.ERFVNLGI.P. | |
Retrocopy | VGVDKNKYQIHILLPPKIDPTVTMKQVEEKPDVAYKDVGGCKEQTEKL*EVIETLLLHTERFVNLGIKPS |
Parental | KGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE |
.GVLLFG..GTGKTLCA.AVANRTDACFIR...SELVQKYVGEGA.MV.ELFE.ARTKKACL.FF.E | |
Retrocopy | EGVLLFGLLGTGKTLCA*AVANRTDACFIRINRSELVQKYVGEGAQMVHELFETARTKKACLMFFEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000005729 | 1 retrocopy | |
Homo sapiens | ENSG00000161057 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009167 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008853 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003432 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017238 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018268 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009274 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005164 | 2 retrocopies |
retro_ogar_2198, retro_ogar_2309 ,
|
Pongo abelii | ENSPPYG00000017883 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019553 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000666 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000008921 | 1 retrocopy |