RetrogeneDB ID: | retro_nleu_1578 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397300.1:8425392..8426690(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000019050 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC2 | ||
Ensembl ID: | ENSNLEG00000009274 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MPDYLGADQRKTKEDEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDT |
MPDYLGA.QRKTKEDEKDDK.I..LDE.DI.LLKTYGQSTYSRQIKQVED.IQQLLKKINEL.GIKESDT | |
Retrocopy | MPDYLGAHQRKTKEDEKDDKLIQVLDEADIVLLKTYGQSTYSRQIKQVEDGIQQLLKKINELIGIKESDT |
Parental | GLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRV |
GLAPPALWDLAADKQTLQS.QPLQVARCTKIINADSEDPKYI.NVK.FAKFV.D.SDQVAPTDIEEGMRV | |
Retrocopy | GLAPPALWDLAADKQTLQSKQPLQVARCTKIINADSEDPKYIVNVKRFAKFVMDFSDQVAPTDIEEGMRV |
Parental | GVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPK |
GVDRNKYQIHIPLPPK.DPTVT.MQVEEKPDVTYS.V..CKEQIEKLREVVETPLLHP.RFVNL.IE.PK | |
Retrocopy | GVDRNKYQIHIPLPPKTDPTVTTMQVEEKPDVTYSNVSDCKEQIEKLREVVETPLLHPDRFVNLSIEAPK |
Parental | GVLLFGPPGTG-KTLCARAVANRTDACFIRVIGSE-LVQKYVGEGARMVRELFEMARTKKACLIFFDEID |
G.LLF.PP.TG.KTLC..AVAN.TDACFIRVIGSE..VQKYV...A.MV.E.FEMARTKKACLIFFDEID | |
Retrocopy | GMLLFNPPSTG<KTLCVQAVANQTDACFIRVIGSE<AVQKYVS*RAQMVNEPFEMARTKKACLIFFDEID |
Parental | AIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDR-KIEFSLPD |
AIGGARFDDGA.GDNEVQRTMLELINQLDGFDPRGNIKVLMATN.PD.LDPALMRPGRLDR.KIEFSLPD | |
Retrocopy | AIGGARFDDGARGDNEVQRTMLELINQLDGFDPRGNIKVLMATN*PDNLDPALMRPGRLDR>KIEFSLPD |
Parental | LEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI |
L.GRTHIFKIHA.SMSVER.IRFELLARLCPN.T.AEIRSVCTEAGMFAIRARRKIATEKDFLEAVN.VI | |
Retrocopy | LKGRTHIFKIHAHSMSVERHIRFELLARLCPNGTAAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNNVI |
Parental | KSYAKFSATPRYMTYN |
KSYAKFSATPRYMTYN | |
Retrocopy | KSYAKFSATPRYMTYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000005729 | 1 retrocopy | |
Homo sapiens | ENSG00000161057 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009167 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008853 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003432 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017238 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018268 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009274 | 2 retrocopies |
retro_nleu_1578 , retro_nleu_2042,
|
Otolemur garnettii | ENSOGAG00000005164 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017883 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019553 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000666 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000008921 | 1 retrocopy |