RetrogeneDB ID: | retro_vpac_44 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1191:10311..11449(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC2 | ||
Ensembl ID: | ENSVPAG00000008921 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Source:HGNC Symbol;Acc:9548] |
Percent Identity: | 77.84 % |
Parental protein coverage: | 87.3 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 5 |
Parental | MPDYLGADQRKTKEDEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDT |
M.D.LGADQ.KT....K.DKPI.A.D.GD.ALLKTYGQSTYSRQIKQ.EDDI.QLLKKINELT.IKESDT | |
Retrocopy | MLDDLGADQWKT----KEDKPI*AQDKGDTALLKTYGQSTYSRQIKQFEDDI*QLLKKINELTDIKESDT |
Parental | GLAPPALWDLAADKQ-TLQSEQPLQVA-RCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPYDMEEGM |
GLAPPALWDLAA.K..TLQ.EQ.LQ.A..C.KII.ADSEDPKYIINVKQ.AKFV.DLSDQVAP...EEGM | |
Retrocopy | GLAPPALWDLAASKE>TLQGEQSLQAA<KCIKIIHADSEDPKYIINVKQYAKFVKDLSDQVAPTNIEEGM |
Parental | RIGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEP |
R.GVDRNKY.IHIPLPPKIDPTVT.MQVEEKP.VTYSDVGGCKE.IEKL.EVV.TPLLHPERF..LGIEP | |
Retrocopy | RVGVDRNKY*IHIPLPPKIDPTVTVMQVEEKPGVTYSDVGGCKEEIEKLQEVVKTPLLHPERFADLGIEP |
Parental | PKGVLLFG-PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGA-RMVRELFEMART---KKACLIF |
PKGVLLF..P.G.GKT.CA.AVANR.DACF.RVIG.ELV.KYVGEGA..MVREL.EMART...KKAC.IF | |
Retrocopy | PKGVLLFA>PLGRGKTFCALAVANRSDACFNRVIGFELV*KYVGEGA>QMVRELLEMARTTTAKKACFIF |
Parental | FDEIDAIGGARF-DDGAGGDN-EVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKI |
.DE.DAIGG..F.D...G.....VQR.MLELI.QLDGFDP.GNIKVLMATNRPDTLDP.LMR...LDRK. | |
Retrocopy | CDEVDAIGGVCFDDGAGGDNK<SVQRRMLELIHQLDGFDP*GNIKVLMATNRPDTLDPVLMRLEGLDRKT |
Parental | EF-SLPDLEGRTHIFKIHARSMSVERDIRFELLARLCP |
E..SL.DL.G.THIFKIHA.S.SVE.DIRFELLA.LCP | |
Retrocopy | ELSSLADLQGQTHIFKIHAHSVSVESDIRFELLA*LCP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000005729 | 1 retrocopy | |
Homo sapiens | ENSG00000161057 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009167 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008853 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003432 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017238 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018268 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009274 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005164 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017883 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019553 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000666 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000008921 | 1 retrocopy |
retro_vpac_44 ,
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