RetrogeneDB ID: | retro_tsyr_2178 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_99642:4683..5350(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC2 | ||
Ensembl ID: | ENSTSYG00000000666 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Source:HGNC Symbol;Acc:9548] |
Percent Identity: | 91.93 % |
Parental protein coverage: | 51.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKA-CLIFFDEIDAI |
...FGPPGTGKTLCARAVANRTDA.FIRVIGSELVQKYVGEGARMV.ELFEMAR.....CLIFFDEIDAI | |
Retrocopy | LIIFGPPGTGKTLCARAVANRTDAYFIRVIGSELVQKYVGEGARMVCELFEMARXXXX>CLIFFDEIDAI |
Parental | GGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEG |
GGARFDDGAGGDNEVQRTMLELI.QLDGFDPRGNIKVLMATN.PDTLDPALMRPGRLDRKIEFSLPDLEG | |
Retrocopy | GGARFDDGAGGDNEVQRTMLELIYQLDGFDPRGNIKVLMATNKPDTLDPALMRPGRLDRKIEFSLPDLEG |
Parental | RTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSY |
RTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRS.CTEAGMFAIRA..KIATEK.FLEAVN.VIKSY | |
Retrocopy | RTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSICTEAGMFAIRAW*KIATEKNFLEAVNEVIKSY |
Parental | AKFSATPRYMTYN |
AKFSATP.YMTYN | |
Retrocopy | AKFSATPCYMTYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000005729 | 1 retrocopy | |
Homo sapiens | ENSG00000161057 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009167 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008853 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003432 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017238 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018268 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009274 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005164 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017883 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019553 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000666 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000008921 | 1 retrocopy |