RetrogeneDB ID: | retro_mmul_1538 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:155500743..155501205(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1104 | ||
Ensembl ID: | ENSMMUG00000003432 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.96 % |
Parental protein coverage: | 78.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPDYLGADQRKTKEDEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDT |
MP.YLG..QRKTKEDEKDDKPI..LDE.DIALLKTYGQSTYSRQIKQVED.IQQLLKKINEL.GIKE.DT | |
Retrocopy | MPYYLGENQRKTKEDEKDDKPI*VLDEVDIALLKTYGQSTYSRQIKQVEDGIQQLLKKINELPGIKEFDT |
Parental | GLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRV |
GLAPPALW.LAADKQTLQS.QPL.VARCTKIINADSEDPKY...VKQFAKFVVD.SDQVAPTDIEEG.RV | |
Retrocopy | GLAPPALWNLAADKQTLQSKQPLRVARCTKIINADSEDPKYTVSVKQFAKFVVDFSDQVAPTDIEEGIRV |
Parental | GVDRNKYQIHIPLP |
GVDRNKYQIHIPLP | |
Retrocopy | GVDRNKYQIHIPLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 29 .58 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 20 .63 RPM |
SRP007412_cerebellum | 0 .00 RPM | 30 .29 RPM |
SRP007412_heart | 0 .00 RPM | 23 .26 RPM |
SRP007412_kidney | 0 .00 RPM | 27 .46 RPM |
SRP007412_liver | 0 .00 RPM | 25 .97 RPM |
SRP007412_testis | 0 .04 RPM | 38 .75 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000005729 | 1 retrocopy | |
Homo sapiens | ENSG00000161057 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009167 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008853 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003432 | 2 retrocopies |
retro_mmul_1538 , retro_mmul_2299,
|
Monodelphis domestica | ENSMODG00000017238 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018268 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009274 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005164 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017883 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019553 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000666 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000008921 | 1 retrocopy |