RetrogeneDB ID: | retro_mputfur_387 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896906.1:15944353..15945653(-) | ||
Located in intron of: | ENSMPUG00000005437 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC2 | ||
Ensembl ID: | ENSMPUG00000018268 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Source:HGNC Symbol;Acc:9548] |
Percent Identity: | 95.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPDYLGADQRKTKEEEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDT |
MPDYLGADQRKTKEEEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDT | |
Retrocopy | MPDYLGADQRKTKEEEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDT |
Parental | GLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRV |
GLAPPALWDLA.DKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRV | |
Retrocopy | GLAPPALWDLASDKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRV |
Parental | GVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPK |
GVDRNKYQIHIPLPPKIDPTVT.MQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIE.PK | |
Retrocopy | GVDRNKYQIHIPLPPKIDPTVTIMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIELPK |
Parental | GVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAI |
GVLLFGPPGTGKTLCA.AVANR.DACF.RVIGSELVQKYVGEG.RMV.ELFEMARTKKACLIFFDEIDAI | |
Retrocopy | GVLLFGPPGTGKTLCAWAVANRIDACFNRVIGSELVQKYVGEGTRMVCELFEMARTKKACLIFFDEIDAI |
Parental | GGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEG |
GGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV.MATNRPDTLDPALMRPGRLDRKIEFSLPDLEG | |
Retrocopy | GGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVMMATNRPDTLDPALMRPGRLDRKIEFSLPDLEG |
Parental | RTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKV-IKS |
RTHIFKIHA.SMSV.R.IRFELL.RLCPNST.A.IRSVCTEAGMFAIRA..KIATEKDFLEAVNKV.IKS | |
Retrocopy | RTHIFKIHAHSMSVKRGIRFELLVRLCPNSTSAKIRSVCTEAGMFAIRAW*KIATEKDFLEAVNKV>IKS |
Parental | YAKFSATPRYMTYN |
YAKF.ATPRYMTYN | |
Retrocopy | YAKFTATPRYMTYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000005729 | 1 retrocopy | |
Homo sapiens | ENSG00000161057 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009167 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008853 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003432 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017238 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018268 | 3 retrocopies |
retro_mputfur_1025, retro_mputfur_232, retro_mputfur_387 ,
|
Nomascus leucogenys | ENSNLEG00000009274 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005164 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017883 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019553 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000666 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000008921 | 1 retrocopy |