RetrogeneDB ID: | retro_ptro_1826 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 3:135674351..135675645(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC2 | ||
Ensembl ID: | ENSPTRG00000019553 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MPDYLGADQRKTKEDEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDT |
MPDYLGA.QRKTK.DEKDDK.I..LDE.DIALLKTYGQSTY.RQIKQVED..QQLLKKINELTGIKESDT | |
Retrocopy | MPDYLGAHQRKTKDDEKDDKSIQVLDEADIALLKTYGQSTYFRQIKQVEDGVQQLLKKINELTGIKESDT |
Parental | GLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRV |
GLAPPALWDLAADKQTLQ..QPLQVARCTKIINADSEDPKYI.NVKQFAKFV.D.SDQVAPTDIEEGMRV | |
Retrocopy | GLAPPALWDLAADKQTLQRKQPLQVARCTKIINADSEDPKYIVNVKQFAKFVMDFSDQVAPTDIEEGMRV |
Parental | GVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPK |
GVDRNKYQIHIPLPPK..PTVTMMQVEEKP.VTYSDVG.CKEQIEKLREVVETPLLHPERFVNLGIEPPK | |
Retrocopy | GVDRNKYQIHIPLPPKTHPTVTMMQVEEKP-VTYSDVGDCKEQIEKLREVVETPLLHPERFVNLGIEPPK |
Parental | GVLLFGPPGTG-KTLCARAVANRTDACFIRVIGSEL-VQKYVGEGARMVRELFEMARTKKACLIFFDEID |
G.LLF.PP.TG.KTLC..AVAN.TDACFIRVIGSEL.VQKYV.E.A.MV.ELFEM.RTKKACLIFFDEID | |
Retrocopy | GMLLFNPPSTG<KTLCVWAVANQTDACFIRVIGSEL<VQKYVSERAQMVHELFEMTRTKKACLIFFDEID |
Parental | AIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDL |
AIGGARFDDGA.GDNEVQRTMLELINQLDGFDPRGNIKVLMATN.PD.LDPALMRPGRLDRKIEFSLPDL | |
Retrocopy | AIGGARFDDGARGDNEVQRTMLELINQLDGFDPRGNIKVLMATN*PDNLDPALMRPGRLDRKIEFSLPDL |
Parental | EGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK |
EGRTHIFKIHA.SMSVER.IRFELLARLCPN.T.AEIRSVCTEAGMFAIRARRKIATEKDFLEAV.KVIK | |
Retrocopy | EGRTHIFKIHAHSMSVERYIRFELLARLCPNGTAAEIRSVCTEAGMFAIRARRKIATEKDFLEAVSKVIK |
Parental | SYAKFSATPRYMTYN |
SYAKFSATP.YMTYN | |
Retrocopy | SYAKFSATPHYMTYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .20 RPM | 42 .11 RPM |
SRP007412_cerebellum | 0 .00 RPM | 68 .00 RPM |
SRP007412_heart | 0 .06 RPM | 72 .40 RPM |
SRP007412_kidney | 0 .03 RPM | 56 .33 RPM |
SRP007412_liver | 0 .16 RPM | 70 .38 RPM |
SRP007412_testis | 0 .53 RPM | 104 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2705 |
Gorilla gorilla | retro_ggor_1885 |
Pongo abelii | retro_pabe_2257 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000005729 | 1 retrocopy | |
Homo sapiens | ENSG00000161057 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009167 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008853 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003432 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017238 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018268 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009274 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005164 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017883 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019553 | 2 retrocopies |
retro_ptro_1826 , retro_ptro_2702,
|
Tarsius syrichta | ENSTSYG00000000666 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000008921 | 1 retrocopy |