RetrogeneDB ID: | retro_tsyr_1031 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_28130:20466..21174(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC2 | ||
Ensembl ID: | ENSTSYG00000000666 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Source:HGNC Symbol;Acc:9548] |
Percent Identity: | 97.03 % |
Parental protein coverage: | 54.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK |
PERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGA.MVRELFEMARTK | |
Retrocopy | PERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGAQMVRELFEMARTK |
Parental | KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRL |
KACLIFFDEIDA.GGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK.LMATNRPDTLDPALMRPGRL | |
Retrocopy | KACLIFFDEIDATGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKLLMATNRPDTLDPALMRPGRL |
Parental | DRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEK |
DRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRS.CTEAGMFAIRA.RKIATEK | |
Retrocopy | DRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSICTEAGMFAIRAGRKIATEK |
Parental | DFLEAVNKVIKSYAKFSATPRYMTYN |
DFLEAVN.VIKSYAKFSATP.YMTYN | |
Retrocopy | DFLEAVNEVIKSYAKFSATPCYMTYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000005729 | 1 retrocopy | |
Homo sapiens | ENSG00000161057 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009167 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008853 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003432 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017238 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000018268 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009274 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005164 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017883 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019553 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000666 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000008921 | 1 retrocopy |