RetrogeneDB ID:

retro_ogar_1476

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873548.1:10045997..10046321(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ARL2BP
Ensembl ID:ENSOGAG00000014535
Aliases:None
Description:ADP-ribosylation factor-like 2 binding protein [Source:HGNC Symbol;Acc:17146]


Retrocopy-Parental alignment summary:






>retro_ogar_1476
ACAGTGGAGAATAAACTCCCCTGCATGACTATTTTTAAAGGATGTATTTCTTTGGTAGAAAACTATCTTGAACAGCCATG
GAACAGGATTCCTGGATACAACACGGCAGCTTTCACAGACACGTTATGGCACTGTAAAGATGACGTGGCCAGGGACACAT
TCACCATGCTGCTCACATTTACAGATTTTATGGTGTTTGAAGAAATATTTCTGGACTACAGAGTAGAAAAAGGAGGCTGG
GGACGGGGCTTAAGCAGTGGTTTAGGGGCGACTTCATTGTACAAAGCATCTTGTAGGCCAGCTCCCCAGAACAATCTATG
GCAC

ORF - retro_ogar_1476 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 62.39 %
Parental protein coverage: 66.87 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTEENKLTYTPIFNEYISLVEKYIEEQLLERIPGFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEM
T.ENKL....IF...ISLVE.Y.E.Q...RIPG.N.AAFT.TL.H.KD.VA.D.F.MLLTFTDF..F.E.
RetrocopyTVENKLPCMTIFKGCISLVENYLE-QPWNRIPGYNTAAFTDTLWHCKDDVARDTFTMLLTFTDFMVFEEI
ParentalFLDYRAEKEGRGLDLSSGLVVTSLCKSSSVPTSQNNLRH
FLDYR.EK.G.G..LSSGL..TSL.K.S..P..QNNL.H
RetrocopyFLDYRVEKGGWGRGLSSGLGATSLYKASCRPAPQNNLWH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1476 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 93 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000048441 retrocopy
Canis familiaris ENSCAFG000000087853 retrocopies
Choloepus hoffmanni ENSCHOG0000000901616 retrocopies
Callithrix jacchus ENSCJAG000000121169 retrocopies
Dipodomys ordii ENSDORG000000163422 retrocopies
Equus caballus ENSECAG000000166213 retrocopies
Felis catus ENSFCAG000000029373 retrocopies
Loxodonta africana ENSLAFG000000086333 retrocopies
Microcebus murinus ENSMICG000000124676 retrocopies
Macaca mulatta ENSMMUG000000203527 retrocopies
Monodelphis domestica ENSMODG000000135111 retrocopy
Mustela putorius furoENSMPUG000000043062 retrocopies
Nomascus leucogenys ENSNLEG000000028037 retrocopies
Otolemur garnettii ENSOGAG00000014535 9 retrocopies
Procavia capensis ENSPCAG000000056642 retrocopies
Pteropus vampyrus ENSPVAG000000013912 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000102541 retrocopy
Tupaia belangeri ENSTBEG000000144411 retrocopy
Tarsius syrichta ENSTSYG0000000492310 retrocopies
Tursiops truncatus ENSTTRG000000127943 retrocopies
Vicugna pacos ENSVPAG000000059762 retrocopies



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