RetrogeneDB ID: | retro_mmul_2059 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:171724661..171724947(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.10867 | ||
Ensembl ID: | ENSMMUG00000020352 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like protein 2-binding protein [Source:RefSeq peptide;Acc:NP_001253957] |
Percent Identity: | 59. % |
Parental protein coverage: | 60.12 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | PIFNEYISLVEKYIEEQLLQRIPGFNMAAFTTTLQHHKDEVAGD-IFDMLLTFTDFLAFKEMFL-DYRAE |
PIFNEYISL..K.I.EQLL..IP.FNMAA.TT...H.KDE.A....F....TF..F.AFKE.FL.D.R.. | |
Retrocopy | PIFNEYISLI*K-IDEQLL*QIPKFNMAALTTS*-HRKDERASC<LFSRPRTFIHFQAFKECFL<D*RVD |
Parental | KEGRGLDLSSGLVVTSLCKSSSVSASQNNL |
K..R.L.LSSGLV..SLC.SSS..A.Q..L | |
Retrocopy | KKIRKLHLSSGLVAASLCRSSSMLAFQTSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .75 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 36 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .85 RPM |
SRP007412_heart | 0 .00 RPM | 26 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .57 RPM |
SRP007412_liver | 0 .00 RPM | 5 .42 RPM |
SRP007412_testis | 0 .00 RPM | 71 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3270 |
Equus caballus | retro_ecab_307 |