RetrogeneDB ID: | retro_fcat_400 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:116418426..116418903(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002937 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.99 % |
Parental protein coverage: | 97.55 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VEEESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYQEFEDTEENKLTYTPIFNEYISLV |
VEEESF.LSFSS.S.AEFDAV.GYL.D.IMDDEFQLLQR..MDKYYQEFED.EENK.TY.PIFN...SL. | |
Retrocopy | VEEESFVLSFSSTSNAEFDAVIGYLQDFIMDDEFQLLQRKSMDKYYQEFEDMEENKFTYVPIFNKCMSLL |
Parental | EKYIEEQLLERIPGFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGLDLSSGL |
EKYIEE.LLE.IPGFNM..F.TTL.HHKDEVAGD..DMLLTFTDFLAFKEMFLDYRAE.E...LDLSSGL | |
Retrocopy | EKYIEE*LLEQIPGFNMVTFPTTL*HHKDEVAGDTVDMLLTFTDFLAFKEMFLDYRAETEKWELDLSSGL |
Parental | VVTSLCKSSPVPASQNDLR |
VVTSL.KS...P.S..DL. | |
Retrocopy | VVTSLSKSPSLPPSLRDLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 30 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .35 RPM |
SRP017611_liver | 0 .00 RPM | 4 .35 RPM |