RetrogeneDB ID: | retro_mmul_1260 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:39014840..39015323(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.10867 | ||
Ensembl ID: | ENSMMUG00000020352 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like protein 2-binding protein [Source:RefSeq peptide;Acc:NP_001253957] |
Percent Identity: | 63.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MDALEEESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEF-EDTEENKLTYTPIFNEY |
M..LEE..F.LSFS.AS.AEFD.VV..LED...D....LLQRNF.DKYYLEF.EDTEEN..TY....... | |
Retrocopy | MGTLEEKNFNLSFS-ASNAEFDPVVAELEDAVVDEKLHLLQRNFIDKYYLEF>EDTEENNVTYMXXXXXX |
Parental | ISLVEKYIEEQLLQR-IPGFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGLD |
...........L..R.IP.FN.A.F.T.LQHHKDEV.GDIFDMLLTFT..LAFK.MFLDYRAEKEG.GLD | |
Retrocopy | XXGRKNMLKDNLCSR<IPEFNVAVFITMLQHHKDEVTGDIFDMLLTFTNVLAFK*MFLDYRAEKEGWGLD |
Parental | LSSGLVVTSLCKSSSVSASQNNLRH |
LSS..VVT.LC..SS..A.QNNL.H | |
Retrocopy | LSSDPVVTLLC-TSSIPAFQNNLQH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 36 .75 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 36 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .85 RPM |
SRP007412_heart | 0 .00 RPM | 26 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .57 RPM |
SRP007412_liver | 0 .00 RPM | 5 .42 RPM |
SRP007412_testis | 0 .04 RPM | 71 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1846 |
Pan troglodytes | retro_ptro_1231 |
Pongo abelii | retro_pabe_1453 |