RetrogeneDB ID: | retro_mmul_2458 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:76329065..76329330(-) | ||
Located in intron of: | ENSMMUG00000021400 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.10867 | ||
Ensembl ID: | ENSMMUG00000020352 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like protein 2-binding protein [Source:RefSeq peptide;Acc:NP_001253957] |
Percent Identity: | 56.52 % |
Parental protein coverage: | 55.21 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | EESFALSFS-SASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFE-DTEENKLTYTPIFNEYISLV |
EE.F.LS.S.SA.DA..DAV.GYL..II.DDEFQ.LQRNF.D.Y...FE..T.ENKL.Y.PI......LV | |
Retrocopy | EERFMLSIS<SALDAACDAVIGYLQEIILDDEFQVLQRNFGD*Y**GFE<STKENKLMYGPILKNK-CLV |
Parental | EKYIEEQLLQRIPGFNMAAFTT |
E.YIE.QLL..I......A..T | |
Retrocopy | ERYIEKQLLE*IFAVKPVALIT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .75 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 36 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .85 RPM |
SRP007412_heart | 0 .00 RPM | 26 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .57 RPM |
SRP007412_liver | 0 .00 RPM | 5 .42 RPM |
SRP007412_testis | 0 .00 RPM | 71 .39 RPM |