RetrogeneDB ID:

retro_mmur_247

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_1970:394925..395343(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMICG00000002226
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMICG00000012467
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mmur_247
TCCCTGTTTTCCATCTCTGAAGCTGAGACTGATGCTATGTTTGGTTCTATCAAGGACGTTGTCATGGATGCTGAGTTTCA
GCTACTGCAGAGACATTTCATGGACAAACACTACCAGGAGCTTGAAGACACGGAAGATAATAAACTCACCTGCACGCCAA
TTTTTAATGACTGCCTTTCTTTGATAGAAAAATATATTGAAGAACAACTGCCAAATCCAACACGGCGGCTTTCACAACAA
CGTTGGAGCAACGTAAAGCTGGTGTGGCCAGGGACAGAGGCAACATGCTGCCACATTTACGGATTTTCTGGCATTTAAAG
AGATGTTTCTGGACTACAGAGCAGAAAGGGAAGGCCGGGGACTGGATTGAAGCAGTGGTTTGGTGGTGACTTGGTTGTGC
AAAACATCTTCAATGCCC

ORF - retro_mmur_247 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.07 %
Parental protein coverage: 93.51 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalSFSSASDAEFDAVVGYLEDIIMDDEFQILQRNFMDKYYQEFEDTEENKLTYTPIFNEYISLVEKYIEEQL
S..S.S.AE.DA..G...D..MD.EFQ.LQR.FMDK.YQE.EDTE.NKLT.TPIFN...SL....IE...
RetrocopySLFSISEAETDAMFGSIKDVVMDAEFQLLQRHFMDKHYQELEDTEDNKLTCTPIFNDCLSL----IEKYI
ParentalLERIPG-FNMAAFTTTLQHHKDEVAGDIFDML-LTFTDFLAFKEMFLDYRAEKEGRGLDLSSGLVVTSLC
.E..P...N.AAFTTTL...K..VA.D...ML..TFTDFLAFKEMFLDYRAE.EGRGLD.SSGLVVT.LC
RetrocopyEEQLPN<SNTAAFTTTLEQRKAGVARDRGNML<ATFTDFLAFKEMFLDYRAEREGRGLD*SSGLVVTWLC
ParentalKSSSMP
K.SSMP
RetrocopyKTSSMP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_247 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_247 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 31 parental genes, and 133 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000048441 retrocopy
Canis familiaris ENSCAFG000000087853 retrocopies
Choloepus hoffmanni ENSCHOG0000000901616 retrocopies
Callithrix jacchus ENSCJAG000000121169 retrocopies
Cavia porcellus ENSCPOG000000114065 retrocopies
Dipodomys ordii ENSDORG000000163422 retrocopies
Equus caballus ENSECAG000000166213 retrocopies
Felis catus ENSFCAG000000029373 retrocopies
Homo sapiens ENSG000001029317 retrocopies
Gorilla gorilla ENSGGOG000000054715 retrocopies
Loxodonta africana ENSLAFG000000086333 retrocopies
Microcebus murinus ENSMICG00000012467 6 retrocopies
Myotis lucifugus ENSMLUG000000126803 retrocopies
Macaca mulatta ENSMMUG000000203527 retrocopies
Monodelphis domestica ENSMODG000000135111 retrocopy
Mustela putorius furoENSMPUG000000043062 retrocopies
Nomascus leucogenys ENSNLEG000000028037 retrocopies
Oryctolagus cuniculus ENSOCUG000000005821 retrocopy
Otolemur garnettii ENSOGAG000000145359 retrocopies
Ochotona princeps ENSOPRG000000069312 retrocopies
Procavia capensis ENSPCAG000000056642 retrocopies
Pongo abelii ENSPPYG000000073848 retrocopies
Pan troglodytes ENSPTRG000000081507 retrocopies
Pteropus vampyrus ENSPVAG000000013912 retrocopies
Rattus norvegicus ENSRNOG000000169911 retrocopy
Sorex araneus ENSSARG000000054421 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000102541 retrocopy
Tupaia belangeri ENSTBEG000000144411 retrocopy
Tarsius syrichta ENSTSYG0000000492310 retrocopies
Tursiops truncatus ENSTTRG000000127943 retrocopies
Vicugna pacos ENSVPAG000000059762 retrocopies



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