RetrogeneDB ID: | retro_ecab_307 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 14:6530940..6531181(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000016621 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.33 % |
Parental protein coverage: | 54.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QLVERIPGFNMAAFTTT-LQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGR-GLDLSSGLVVTS |
.L.E.IP.FNMA.F..T...HHKDEVAGD....LLTFT.F...K.M.LDY.A...G..GLD.SSG..VT. | |
Retrocopy | ELLEQIPIFNMATFPAT<IRHHKDEVAGDVLNVLLTFTAFQLLK-MLLDYQAGEGGQ<GLDFSSGSGVTL |
Parental | LCKSSSVPASQNSL |
LCKSS..P.SQ..L | |
Retrocopy | LCKSSFMPPSQKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 47 .87 RPM |
SRP021940_cerebellum | 0 .00 RPM | 109 .53 RPM |
SRP021940_embryo | 0 .03 RPM | 61 .40 RPM |
SRP021940_placental_villous | 0 .00 RPM | 32 .91 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 48 .32 RPM |
SRP021940_testis | 0 .32 RPM | 174 .12 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3270 |
Macaca mulatta | retro_mmul_2059 |