RetrogeneDB ID: | retro_mmul_2055 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:159127383..159127862(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000015846 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.10867 | ||
Ensembl ID: | ENSMMUG00000020352 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like protein 2-binding protein [Source:RefSeq peptide;Acc:NP_001253957] |
Percent Identity: | 67.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MDALEEESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKLTYTPIFNEYI |
M..LEEE.F.LSFSS.S...F.AV.GY...I..D.E.QLLQRNF.DKY..E.EDT..NKLTY.P.F.EYI | |
Retrocopy | MNTLEEENFLLSFSSISGEQFYAVAGYY--IMLDNELQLLQRNFLDKYCQELEDTLKNKLTYMPTFSEYI |
Parental | SLVEKYIEEQLLQRIPGFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEG-RGLDL |
SLVEKYI..QLL....GFNMAAF.TTLQH.K.EV.GDIFD.L.TFT...AFKE.FLDY..E..G...LDL | |
Retrocopy | SLVEKYIKDQLLGQMLGFNMAAF-TTLQHDKEEVVGDIFDILFTFTGLIAFKEQFLDYKEENQG<LRLDL |
Parental | SSGLVVTSLCKSSSVSASQNNLRH |
SSGLVVTSLC.SSS.SASQN.L.H | |
Retrocopy | SSGLVVTSLCRSSSMSASQNDLKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .75 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 36 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .85 RPM |
SRP007412_heart | 0 .00 RPM | 26 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .57 RPM |
SRP007412_liver | 0 .00 RPM | 5 .42 RPM |
SRP007412_testis | 0 .00 RPM | 71 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3263 |
Pan troglodytes | retro_ptro_2207 |
Gorilla gorilla | retro_ggor_2222 |
Pongo abelii | retro_pabe_2704 |