RetrogeneDB ID: | retro_ecab_344 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 15:2111986..2112290(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000010609 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000016621 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.47 % |
Parental protein coverage: | 66.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TYTPIFNEYISLVEKYIEEQLVERIPGFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRA |
T.T.IFN.YISLVE.YIEEQL.E.IPGFNMAAFTT...HH.DEVAGDI....LTF.DFLAFKEMFL.YRA | |
Retrocopy | TNTLIFNKYISLVENYIEEQLLEGIPGFNMAAFTTAVRHHQDEVAGDILNVQLTFMDFLAFKEMFLEYRA |
Parental | E-KEGRGLDLSSGLVVTSLCKSSSVPASQNSL |
E.KEG.GLDLSSGLV.TSLCKSSS.PA...S. | |
Retrocopy | E>KEGQGLDLSSGLVATSLCKSSSMPAYSSSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 47 .87 RPM |
SRP021940_cerebellum | 0 .00 RPM | 109 .53 RPM |
SRP021940_embryo | 0 .00 RPM | 61 .40 RPM |
SRP021940_placental_villous | 0 .00 RPM | 32 .91 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 48 .32 RPM |
SRP021940_testis | 0 .00 RPM | 174 .12 RPM |