RetrogeneDB ID: | retro_mmul_2037 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:126982170..126982498(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.10867 | ||
Ensembl ID: | ENSMMUG00000020352 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like protein 2-binding protein [Source:RefSeq peptide;Acc:NP_001253957] |
Percent Identity: | 75.44 % |
Parental protein coverage: | 69.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RNFMDKYYLEFEDTEENKLTYTPIFNEYISLVEKYIEEQLLQRIPGFNMAAFTTTLQHHKDEVAGDIFDM |
RNFMDKYY.EF.D.EENKL...PIFNEYISLV.KY..EQLL.RIPGFN...FT.TLQHHKDEVAGDIF.. | |
Retrocopy | RNFMDKYY*EFADIEENKLNLMPIFNEYISLVGKYV-EQLLERIPGFNVVVFTATLQHHKDEVAGDIFN- |
Parental | LLTFTD-FLAFKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSV |
..TFTD.FLAFKE.FLDY.AEK...GLDLS.GLVVT..CKSSS. | |
Retrocopy | --TFTD>FLAFKEIFLDYKAEKADQGLDLSGGLVVTLSCKSSSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .75 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 36 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .85 RPM |
SRP007412_heart | 0 .00 RPM | 26 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .57 RPM |
SRP007412_liver | 0 .00 RPM | 5 .42 RPM |
SRP007412_testis | 0 .30 RPM | 71 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3237 |
Pan troglodytes | retro_ptro_2189 |
Gorilla gorilla | retro_ggor_2202 |
Pongo abelii | retro_pabe_2684 |