RetrogeneDB ID: | retro_fcat_974 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:81684492..81684978(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002937 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.69 % |
Parental protein coverage: | 99.39 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | DAVEEESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYQEFEDTEENKLTYTPIFNEYIS |
...EEESFALS.SSAS.AEF.AV.G..EDI.MD.E.Q.LQRNFMD.Y.QEF.D.EENKLTYTPIFNEY.S | |
Retrocopy | EVLEEESFALSTSSASEAEFAAVLGSIEDIVMDAELQVLQRNFMDRYCQEFGDMEENKLTYTPIFNEYLS |
Parental | LVEKYIEEQLLERIPGFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGLDLSS |
LVEKYIEE..L..I.GFNMAAFT.TL.HHK.E.A.D.FDMLLTFTDFL.FK..FLDYRAEKEG.GL.LSS | |
Retrocopy | LVEKYIEELQLTGILGFNMAAFTATLKHHKEEMADDLFDMLLTFTDFLTFK*IFLDYRAEKEG*GLVLSS |
Parental | GLVVTSLCKSSPVPASQNDLRH |
G..VTSLCKSS.V.ASQN...H | |
Retrocopy | GFIVTSLCKSSSVAASQNNP*H |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 30 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .35 RPM |
SRP017611_liver | 0 .00 RPM | 4 .35 RPM |