RetrogeneDB ID: | retro_opri_1032 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_6040:16750..17118(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSOPRG00000001204 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 87.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MAPAKKG..KK..RSAINEVVTR.YTINIHK.IHGVGFK..AP.ALKEIRKFA.KEMGTPDVRIDTRLNK | |
Retrocopy | MAPAKKGSNKKR-RSAINEVVTRKYTINIHKHIHGVGFKP-APQALKEIRKFAVKEMGTPDVRIDTRLNK |
Parental | AVWAKGIRNVP-YRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
AVWAKGIRNVP..RIRVRLSRK.N.DEDSPNKLYTLVT..PVTTFKNLQTVNVDEN | |
Retrocopy | AVWAKGIRNVP<VRIRVRLSRKPNKDEDSPNKLYTLVT*MPVTTFKNLQTVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |