RetrogeneDB ID: | retro_opri_113 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_2370:167067..167362(+) | ||
Located in intron of: | ENSOPRG00000014936 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSOPRG00000001204 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 62.75 % |
Parental protein coverage: | 80. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MAPAKKGG.KKKG.S.INEV.T.EY.IN.HK..H..GFKK.AP.AL...............V.IDT.LNK | |
Retrocopy | MAPAKKGG-KKKGCSGINEVMTWEYVINFHKHMHKIGFKKWAPWALRDPEVYQERDEDSRCVCIDTSLNK |
Parental | AVWAKGIRNVP-YRIRVRLSRKRNE-DEDSPN |
AVWAKGIRNVP...I.VR.SRK.NE..EDSPN | |
Retrocopy | AVWAKGIRNVP<THIHVR*SRKLNE<GEDSPN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |