RetrogeneDB ID: | retro_opri_179 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_3280:29955..30309(+) | ||
Located in intron of: | ENSOPRG00000016192 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSOPRG00000001204 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 80.83 % |
Parental protein coverage: | 96. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAK |
KGG..KKGRSAINEVVT.EY..N.H..IHGVGFKKRAPRAL.EIRK.AMKEMGTPDV.IDTRLNKAVWAK | |
Retrocopy | KGG--KKGRSAINEVVTQEYAVNSHECIHGVGFKKRAPRALREIRKIAMKEMGTPDVCIDTRLNKAVWAK |
Parental | GIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
GIR.VP.RI..RLSRK.N.DEDSPNKL..LVTYVPVT.FKNLQ.VNV.E. | |
Retrocopy | GIRSVPSRICLRLSRKCNADEDSPNKLCPLVTYVPVTIFKNLQIVNVNES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |