RetrogeneDB ID: | retro_opri_796 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_31268:6192..6543(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSOPRG00000001204 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 62.3 % |
Parental protein coverage: | 95.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MAPAKKGG.KKKG.S.INEV.T.EY.IN.HK..H..GFKK.AP.AL...............V.IDT.LNK | |
Retrocopy | MAPAKKGG-KKKGCSGINEVMTWEYVINFHKHMHKIGFKKWAPWALRDPEVYQERDEDSRCVCIDTSLNK |
Parental | AVWAKGIRNVP-YRIRVRLSRKRNE-DEDSPNK-LYTLVTYVPVTTFKNLQT |
AVWAKGIRNVP...I.VR.SRK.NE..EDSPN..L.TL.TYV..T.FKNLQ. | |
Retrocopy | AVWAKGIRNVP<THIHVR*SRKLNE<GEDSPNN<LHTLITYVLATSFKNLQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |