RetrogeneDB ID: | retro_opri_132 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_2641:191038..191363(-) | ||
Located in intron of: | ENSOPRG00000014115 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSOPRG00000001204 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 71.68 % |
Parental protein coverage: | 88.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIR-KFAMKEMGTPDVRIDTRLN |
MAPAKK.G..KKG.S.I.EVV...YT.NIHK.IH.VGFK..AP.AL.EI..KFAMKEMGTP.V.IDTRLN | |
Retrocopy | MAPAKKSG--KKGCSTISEVVMWGYTNNIHKGIHRVGFKNCAPKALREIQ<KFAMKEMGTPHVCIDTRLN |
Parental | KAVWAKG-IRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPV |
K.VWAK..IRNVPY...VR.SRK..EDEDS.N.LYTLVTYVP. | |
Retrocopy | KTVWAKE<IRNVPYCFHVR*SRKCDEDEDSLNELYTLVTYVPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |