Parental gene:

RPL31, ENSOPRG00000001204

Aliases:None
Description:ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_3981:221571..226131(+)


>ENSOPRG00000001204
ATGGCTCCCGCGAAGAAGGGCGGCGAGAAGAAGAAGGGCCGTTCGGCCATCAACGAGGTGGTGACGCGGGAGTACACCAT
CAACATCCACAAGCGCATCCATGGAGTGGGCTTCAAGAAGCGAGCTCCTCGGGCGCTGAAGGAGATCCGGAAGTTTGCCA
TGAAAGAAATGGGTACGCCGGATGTGCGCATTGATACGAGGCTAAACAAAGCTGTGTGGGCCAAAGGAATAAGGAACGTC
CCGTACCGCATCCGCGTGAGACTGTCCAGGAAACGTAACGAGGATGAAGATTCGCCCAACAAGCTCTATACTCTGGTTAC
CTACGTGCCTGTCACCACTTTCAAAAATCTACAGACTGTCAATGTGGATGAGAACTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015647 ortholog_one2one 2 retrogenes
retro_amel_12, retro_amel_222,
Latimeria chalumnae ENSLACG00000013603 ortholog_one2one 1 retrogene
retro_lcha_94,
Loxodonta africana ENSLAFG00000027873 ortholog_one2one 12 retrogenes
retro_lafr_118, retro_lafr_187, retro_lafr_20, retro_lafr_245, retro_lafr_307, retro_lafr_56, retro_lafr_663, retro_lafr_703, retro_lafr_710, retro_lafr_778, retro_lafr_885, retro_lafr_926,
Macropus eugenii ENSMEUG00000000963 ortholog_one2one 8 retrogenes
retro_meug_1083, retro_meug_1433, retro_meug_1731, retro_meug_1741, retro_meug_198, retro_meug_418, retro_meug_588, retro_meug_649,
Myotis lucifugus ENSMLUG00000002507 possible_ortholog 21 retrogenes
retro_mluc_1072, retro_mluc_1135, retro_mluc_1239, retro_mluc_1301, retro_mluc_1406, retro_mluc_1470, retro_mluc_1666, retro_mluc_1678, retro_mluc_1896, retro_mluc_1913, retro_mluc_2028, retro_mluc_2124, retro_mluc_2126, retro_mluc_269, retro_mluc_303, retro_mluc_463, retro_mluc_767, retro_mluc_782, retro_mluc_914, retro_mluc_922, retro_mluc_997,
Otolemur garnettii ENSOGAG00000014494 possible_ortholog 10 retrogenes
retro_ogar_103, retro_ogar_143, retro_ogar_150, retro_ogar_178, retro_ogar_181, retro_ogar_186, retro_ogar_262, retro_ogar_271, retro_ogar_29, retro_ogar_3,
Pongo abelii ENSPPYG00000025870 ortholog_one2many 4 retrogenes
retro_pabe_106, retro_pabe_1635, retro_pabe_168, retro_pabe_895,
Sus scrofa ENSSSCG00000008170 possible_ortholog 4 retrogenes
retro_sscr_1072, retro_sscr_1073, retro_sscr_128, retro_sscr_263,
Sus scrofa ENSSSCG00000025180 possible_ortholog 6 retrogenes
retro_sscr_20, retro_sscr_34, retro_sscr_469, retro_sscr_501, retro_sscr_713, retro_sscr_81,
Tupaia belangeri ENSTBEG00000016254 ortholog_one2one 137 retrogenes
retro_tbel_1092, retro_tbel_1129, retro_tbel_115, retro_tbel_1176, retro_tbel_1195, retro_tbel_1226, retro_tbel_1239, retro_tbel_1249, retro_tbel_1254, retro_tbel_1258, retro_tbel_1266, retro_tbel_131, retro_tbel_1310, retro_tbel_1334, retro_tbel_1356, retro_tbel_1368, retro_tbel_1369, retro_tbel_1381, retro_tbel_1402, retro_tbel_1414, retro_tbel_1423, retro_tbel_1437, retro_tbel_1454, retro_tbel_1574, retro_tbel_1593, retro_tbel_1597, retro_tbel_1605, retro_tbel_1611, retro_tbel_1612, retro_tbel_1632, retro_tbel_1768, retro_tbel_1797, retro_tbel_1802, retro_tbel_184, retro_tbel_189, retro_tbel_1890, retro_tbel_1897, retro_tbel_1915, retro_tbel_2024, retro_tbel_2027, retro_tbel_2050, retro_tbel_2069, retro_tbel_2093, retro_tbel_2140, retro_tbel_2159, retro_tbel_2233, retro_tbel_2341, retro_tbel_2359, retro_tbel_2382, retro_tbel_246, retro_tbel_2520, retro_tbel_2531, retro_tbel_2581, retro_tbel_2582, retro_tbel_2614, retro_tbel_2625, retro_tbel_2668, retro_tbel_2692, retro_tbel_2709, retro_tbel_2741, retro_tbel_2789, retro_tbel_2825, retro_tbel_2847, retro_tbel_2930, retro_tbel_2951, retro_tbel_3015, retro_tbel_3028, retro_tbel_3035, retro_tbel_3061, retro_tbel_3077, retro_tbel_3154, retro_tbel_3174, retro_tbel_3222, retro_tbel_3274, retro_tbel_3282, retro_tbel_3292, retro_tbel_3346, retro_tbel_3365, retro_tbel_337, retro_tbel_3378, retro_tbel_3425, retro_tbel_3442, retro_tbel_3484, retro_tbel_3500, retro_tbel_3519, retro_tbel_3578, retro_tbel_3580, retro_tbel_3618, retro_tbel_3637, retro_tbel_3710, retro_tbel_3722, retro_tbel_3745, retro_tbel_3775, retro_tbel_3780, retro_tbel_3794, retro_tbel_3801, retro_tbel_381, retro_tbel_3812, retro_tbel_3846, retro_tbel_3869, retro_tbel_3873, retro_tbel_398, retro_tbel_3982, retro_tbel_3996, retro_tbel_4033, retro_tbel_4069, retro_tbel_4158, retro_tbel_4161, retro_tbel_4174, retro_tbel_4235, retro_tbel_4247, retro_tbel_4286, retro_tbel_4297, retro_tbel_4363, retro_tbel_4374, retro_tbel_461, retro_tbel_4612, retro_tbel_4646, retro_tbel_466, retro_tbel_488, retro_tbel_503, retro_tbel_510, retro_tbel_577, retro_tbel_599, retro_tbel_626, retro_tbel_696, retro_tbel_718, retro_tbel_741, retro_tbel_744, retro_tbel_780, retro_tbel_788, retro_tbel_872, retro_tbel_886, retro_tbel_891, retro_tbel_908, retro_tbel_914, retro_tbel_942,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_58 68.69 76.80
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2. retro_opri_93 54.46 88.00
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3. retro_opri_113 62.75 80.00
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4. retro_opri_132 71.68 88.80
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5. retro_opri_152 87.30 100.00
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6. retro_opri_179 80.83 96.00
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7. retro_opri_213 64.00 100.00
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8. retro_opri_236 99.20 100.00
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9. retro_opri_259 64.71 94.40
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10. retro_opri_346 55.88 81.60
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11. retro_opri_411 71.68 88.80
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12. retro_opri_435 68.69 76.80
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13. retro_opri_531 56.56 96.00
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14. retro_opri_561 67.72 99.20
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15. retro_opri_572 75.00 86.40
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16. retro_opri_588 66.13 97.60
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17. retro_opri_602 99.20 100.00
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18. retro_opri_677 66.94 96.00
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19. retro_opri_710 57.14 88.00
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20. retro_opri_744 62.75 80.00
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21. retro_opri_796 62.30 95.20
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22. retro_opri_803 55.88 81.60
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23. retro_opri_804 85.71 100.00
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24. retro_opri_811 67.44 100.00
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25. retro_opri_819 54.46 88.00
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26. retro_opri_909 64.00 100.00
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27. retro_opri_915 79.20 100.00
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28. retro_opri_1032 87.30 100.00
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29. retro_opri_1059 71.15 83.20
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30. retro_opri_1081 64.71 94.40
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31. retro_opri_1108 80.83 96.00
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32. retro_opri_1117 70.00 95.20
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33. retro_opri_1176 77.95 100.00
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34. retro_opri_1177 86.61 88.80
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Download FASTA sequences of all ENSOPRG00000001204 retrocopies