RetrogeneDB ID: | retro_opri_1177 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_88370:5043..5369(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSOPRG00000001204 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 86.61 % |
Parental protein coverage: | 88.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SAINEVVTREYTINIHKRIHG-VGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYR |
SAINEVVTR.YTIN.HKRIHG..GFKKRAPRAL.EIRKFAMKEMGTPDVRIDTRLNKAVW.K.I.NV.YR | |
Retrocopy | SAINEVVTRKYTINTHKRIHG<MGFKKRAPRALNEIRKFAMKEMGTPDVRIDTRLNKAVWVKRIKNVLYR |
Parental | IRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
IR.RLSRKRN.DEDSPN.LYTLVTYVP..TFKNLQTV.VDEN | |
Retrocopy | IRLRLSRKRNKDEDSPN*LYTLVTYVP--TFKNLQTVSVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |