Parental gene: | RPS18, ENSCAFG00000000950 |
| Aliases: | None |
| Description: | Canis lupus familiaris ribosomal protein S18 (RPS18), mRNA. [Source:RefSeq mRNA;Acc:NM_001048082] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 12:2712957..2718657(+) |
>ENSCAFG00000000950
ATGTCTCTAGTGATCCCTGAGAAGTTCCAGCACATTTTGCGAGTACTTAACACCAATATCGATGGGCGGCGGAAAATAGC
CTTTGCCATCACAGCAATTAAGGGTGTGGGGCGAAGATATGCTCATGTGGTATTGAGGAAAGCAGACATCGATCTCACCA
AGAGAGCAGGAGAGCTCACTGAGGATGAGGTGGAACGTGTGATCACTATTATGCAGAATCCACGCCAGTATAAGATCCCT
GACTGGTTTTTGAACAGACAAAAGGATGTAAAGGATGGAAAGTACAGCCAGGTCCTGGCCAATGGTCTGGACAACAAACT
TCGTGAAGACCTGGAGAGACTGAAGAAGATTCGAGCCCACAGGGGGCTGCGCCACTTTTGGGGACTTCGTGTCCGAGGCC
AGCACACCAAGACCACAGGGCGCCGTGGTCGCACCGTGGGTGTGTCCAAGAAGAAATAA
ATGTCTCTAGTGATCCCTGAGAAGTTCCAGCACATTTTGCGAGTACTTAACACCAATATCGATGGGCGGCGGAAAATAGC
CTTTGCCATCACAGCAATTAAGGGTGTGGGGCGAAGATATGCTCATGTGGTATTGAGGAAAGCAGACATCGATCTCACCA
AGAGAGCAGGAGAGCTCACTGAGGATGAGGTGGAACGTGTGATCACTATTATGCAGAATCCACGCCAGTATAAGATCCCT
GACTGGTTTTTGAACAGACAAAAGGATGTAAAGGATGGAAAGTACAGCCAGGTCCTGGCCAATGGTCTGGACAACAAACT
TCGTGAAGACCTGGAGAGACTGAAGAAGATTCGAGCCCACAGGGGGCTGCGCCACTTTTGGGGACTTCGTGTCCGAGGCC
AGCACACCAAGACCACAGGGCGCCGTGGTCGCACCGTGGGTGTGTCCAAGAAGAAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 90 .43 RPM |
| SRP017611_kidney | 675 .30 RPM |
| SRP017611_liver | 191 .73 RPM |
| SRP012049_cerebellum | 228 .26 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dipodomys ordii | ENSDORG00000013825 | ortholog_one2one | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000006571 | possible_ortholog | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000032173 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003867 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000008668 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000006840 | ortholog_one2one | 10 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000010546 | possible_ortholog | 1 retrogene | |
| Procavia capensis | ENSPCAG00000005854 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000025953 | possible_ortholog | 14 retrogenes | |
| Pan troglodytes | ENSPTRG00000018039 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000028505 | ortholog_one2one | 4 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000006857 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000008658 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_414 | 65.93 | 59.21 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_522 | 62.39 | 70.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_789 | 62.07 | 55.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_856 | 61.86 | 75.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_1311 | 86.18 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_1607 | 76.47 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cfam_2132 | 73.33 | 68.42 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000000950 retrocopies