Parental gene:

RPS18, ENSNLEG00000006840

Aliases:None
Description:None
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397342.1:10092410..10096881(+)


>ENSNLEG00000006840
ATGATATCGCGTCACTTCCGCTCTCTCTCTTCCACAGGAGGCCTACACGCTGCCGCTTGTGCTGCCGCCATGTCTCTAGT
GATCCCTGAAAAGTTCCAGCATATTTTGCGAGTACTCAACACCAACATCGATGGGCGGCGGAAAATAGCCTTTGCCATCA
CTGCCATTAAGGGTGTGGGCCGAAGATATGCTCATGTGGTCTTGAGGAAAGCAGACATTGACCTCACCAAGAGGGCGGGA
GAACTCACTGAGGATGAGGTGGAACGTGTAATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTT
GAACAGACAGAAGGATGTAAAGGATGGAAAATATAGCCAGGTCCTAGCCAATGGTCTGGACAACAAGCTCCGTGAAGACC
TGGAGCGACTGAAGAAGATTCGGGCCCATAGAGGGCTGCGTCACTTCTGGGGCCTTCGTGTCCGAGGCCAGCACACCAAG
ACTACTGGCCGCCGTGGCCGCACTGTGGGTGTGTCCAAGAAGAAATAA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000000950 ortholog_one2one 7 retrogenes
retro_cfam_1311, retro_cfam_1607, retro_cfam_2132, retro_cfam_414, retro_cfam_522, retro_cfam_789, retro_cfam_856,
Dipodomys ordii ENSDORG00000013825 ortholog_one2one 6 retrogenes
retro_dord_185, retro_dord_326, retro_dord_426, retro_dord_481, retro_dord_50, retro_dord_772,
Gorilla gorilla ENSGGOG00000006571 possible_ortholog 5 retrogenes
retro_ggor_1496, retro_ggor_2310, retro_ggor_344, retro_ggor_77, retro_ggor_93,
Loxodonta africana ENSLAFG00000032173 possible_ortholog 1 retrogene
retro_lafr_1171,
Macaca mulatta ENSMMUG00000003867 possible_ortholog 1 retrogene
retro_mmul_2198,
Monodelphis domestica ENSMODG00000014210 possible_ortholog 4 retrogenes
retro_mdom_1041, retro_mdom_1286, retro_mdom_1514, retro_mdom_642,
Mus musculus ENSMUSG00000008668 ortholog_one2one 2 retrogenes
retro_mmus_57, retro_mmus_66,
Oryctolagus cuniculus ENSOCUG00000010546 possible_ortholog 1 retrogene
retro_ocun_31,
Procavia capensis ENSPCAG00000005854 ortholog_one2one 2 retrogenes
retro_pcap_235, retro_pcap_319,
Pongo abelii ENSPPYG00000025953 possible_ortholog 14 retrogenes
retro_pabe_1138, retro_pabe_128, retro_pabe_1481, retro_pabe_1482, retro_pabe_1813, retro_pabe_1881, retro_pabe_2303, retro_pabe_2407, retro_pabe_2663, retro_pabe_2833, retro_pabe_2967, retro_pabe_3013, retro_pabe_3070, retro_pabe_368,
Pan troglodytes ENSPTRG00000018039 possible_ortholog 1 retrogene
retro_ptro_121,
Rattus norvegicus ENSRNOG00000028505 ortholog_one2one 4 retrogenes
retro_rnor_102, retro_rnor_234, retro_rnor_29, retro_rnor_70,
Sarcophilus harrisii ENSSHAG00000006857 ortholog_one2one 2 retrogenes
retro_shar_265, retro_shar_563,
Sarcophilus harrisii ENSSHAG00000008658 possible_ortholog 1 retrogene
retro_shar_618,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_nleu_60 94.08 86.86
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2. retro_nleu_219 84.94 94.86
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3. retro_nleu_525 80.00 57.14
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4. retro_nleu_737 86.36 62.86
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5. retro_nleu_1074 88.34 93.14
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6. retro_nleu_1161 81.55 58.29
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7. retro_nleu_1176 64.29 94.29
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8. retro_nleu_1466 96.41 94.86
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9. retro_nleu_2572 60.34 66.29
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10. retro_nleu_2616 82.17 88.00
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Download FASTA sequences of all ENSNLEG00000006840 retrocopies