RetrogeneDB ID: | retro_pcap_235 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_20170:10901..11356(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSPCAG00000005854 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 86.93 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHV-VLRKADIDLTKRAGELTEDEVERVIT |
MSLVIP.KFQHI.RVL.TNIDGR.KIAFAITAIKGVG.RYA.V..LRKADIDL.KRAGELTEDEVE.VIT | |
Retrocopy | MSLVIPQKFQHIMRVLITNIDGR*KIAFAITAIKGVGQRYAPV<MLRKADIDLPKRAGELTEDEVEHVIT |
Parental | IMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTT |
.MQNPRQY.IPDWFLN.QKDVKDGK.SQVLANGLDNKLREDLER.K.IRAHRGLRH.WGLRV.GQHTKTT | |
Retrocopy | LMQNPRQYQIPDWFLNKQKDVKDGKCSQVLANGLDNKLREDLERPK*IRAHRGLRHVWGLRV*GQHTKTT |
Parental | GRRGRTVGVSKKK |
G.RG.TVGVSKKK | |
Retrocopy | GHRGHTVGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000950 | 7 retrocopies | |
Dipodomys ordii | ENSDORG00000013825 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000006571 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000032173 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003867 | 1 retrocopy | |
Mus musculus | ENSMUSG00000008668 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006840 | 10 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010546 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005854 | 2 retrocopies |
retro_pcap_235 , retro_pcap_319,
|
Pongo abelii | ENSPPYG00000025953 | 14 retrocopies | |
Pan troglodytes | ENSPTRG00000018039 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000028505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006857 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008658 | 1 retrocopy |