RetrogeneDB ID: | retro_dord_50 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_1356:182482..182938(-) | ||
Located in intron of: | ENSDORG00000015406 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps18 | ||
Ensembl ID: | ENSDORG00000013825 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:MGI Symbol;Acc:MGI:98146] |
Percent Identity: | 83.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
MSLVIPEKFQHIL.VLNTNIDG.RK.AFAITAIKGVG.RY..VVLRKADIDLTKRAGELTEDEVE.VIT. | |
Retrocopy | MSLVIPEKFQHIL*VLNTNIDGWRKRAFAITAIKGVG*RYIQVVLRKADIDLTKRAGELTEDEVEHVITK |
Parental | MQNPR-QYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRG-LRHFWGLRVRGQHTKT |
......QYK.PDWFLNRQKDVKDGKY.QVLA.GLDNKL.EDLE.LKKIRA..G.LRHFWGL.VRGQHTKT | |
Retrocopy | SVESK>QYKTPDWFLNRQKDVKDGKYNQVLATGLDNKLCEDLEGLKKIRAQGG<LRHFWGL*VRGQHTKT |
Parental | TGRRGRTVGVSKKK |
TG..GRTVG.SKKK | |
Retrocopy | TGHCGRTVGMSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000950 | 7 retrocopies | |
Dipodomys ordii | ENSDORG00000013825 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000006571 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000032173 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003867 | 1 retrocopy | |
Mus musculus | ENSMUSG00000008668 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006840 | 10 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010546 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005854 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025953 | 14 retrocopies | |
Pan troglodytes | ENSPTRG00000018039 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000028505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006857 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008658 | 1 retrocopy |