RetrogeneDB ID: | retro_mmus_57 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:97760129..97760588(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000069117 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps18 | ||
Ensembl ID: | ENSMUSG00000008668 | ||
Aliases: | Rps18, H-2Ke3, H2-Ke3, Ke-3, ke3 | ||
Description: | ribosomal protein S18 [Source:MGI Symbol;Acc:MGI:98146] |
Percent Identity: | 98.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI | |
Retrocopy | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
Parental | MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG |
MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGL.HFWGLRVRGQHTKTTG | |
Retrocopy | MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLHHFWGLRVRGQHTKTTG |
Parental | RRGRTVGVSKKK |
RRG.TVGVSKKK | |
Retrocopy | RRGQTVGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 4 .95 RPM | 27 .31 RPM |
SRP007412_cerebellum | 24 .19 RPM | 14 .59 RPM |
SRP007412_heart | 0 .09 RPM | 70 .88 RPM |
SRP007412_kidney | 45 .18 RPM | 48 .64 RPM |
SRP007412_liver | 37 .00 RPM | 69 .75 RPM |
SRP007412_testis | 45 .19 RPM | 28 .22 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF001YIJ | POLR2A | 13:97760378..97760593 |
ENCFF001YKA | POLR2A | 13:97760207..97760588 |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_31913 | 641 libraries | 390 libraries | 39 libraries | 2 libraries | 0 libraries |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000950 | 7 retrocopies | |
Dipodomys ordii | ENSDORG00000013825 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000006571 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000032173 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003867 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014210 | 4 retrocopies | |
Mus musculus | ENSMUSG00000008668 | 2 retrocopies |
retro_mmus_57 , retro_mmus_66,
|
Nomascus leucogenys | ENSNLEG00000006840 | 10 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010546 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005854 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025953 | 14 retrocopies | |
Pan troglodytes | ENSPTRG00000018039 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000028505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006857 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008658 | 1 retrocopy |