RetrogeneDB ID: | retro_nleu_1176 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397284.1:1623084..1623578(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSNLEG00000006840 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.29 % |
Parental protein coverage: | 94.29 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | STGGLHA-AACAAAMSLVIPEKFQHILRVLNTNIDGRRKIA-FAITAIKGVGRRYAHVVLRKADIDLTKR |
STGGLHA....AA.MSLV..EKFQHIL.VLNTNI.G..K...FAI...K.VG.RYAHVVLRKADIDLT.. | |
Retrocopy | STGGLHA>TTSAAIMSLVSSEKFQHIL*VLNTNINGGGKQT<FAIAIFKDVGQRYAHVVLRKADIDLTES |
Parental | AGELTEDEVERVITIMQNPRQYKIPDWFLNR-QKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLR |
.GE.TE.EVERVITIMQ.....KIPD.F.NR...D.KDGKY.Q.L..GLD..L.EDL..LKKI.A.RGL. | |
Retrocopy | TGEFTEEEVERVITIMQYLH*HKIPDSFVNR<IEDGKDGKYTQILITGLDTELHEDLQQLKKIPACRGLS |
Parental | HFWGLRVRGQHTKTTGRRGRTVGVSKKK |
HF.G..V..QH..TTG.....VGV.KKK | |
Retrocopy | HFLGPLV*CQHSETTGCYSHVVGVFKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000950 | 7 retrocopies | |
Dipodomys ordii | ENSDORG00000013825 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000006571 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000032173 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003867 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014210 | 4 retrocopies | |
Mus musculus | ENSMUSG00000008668 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006840 | 10 retrocopies |
retro_nleu_1074, retro_nleu_1161, retro_nleu_1176 , retro_nleu_1466, retro_nleu_219, retro_nleu_2572, retro_nleu_2616, retro_nleu_525, retro_nleu_60, retro_nleu_737,
|
Oryctolagus cuniculus | ENSOCUG00000010546 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005854 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025953 | 14 retrocopies | |
Pan troglodytes | ENSPTRG00000018039 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000028505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006857 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008658 | 1 retrocopy |