RetrogeneDB ID: | retro_cfam_988 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 20:34908686..34909118(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSCAFG00000004567 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris peroxiredoxin 1 (PRDX1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252165] |
Percent Identity: | 96.53 % |
Parental protein coverage: | 72.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSGNAKIGHPAPNFKATAVMPDGQFKDLSLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
MSSGNAKIGHPAPNFKATAVMPDGQFK.LSLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN | |
Retrocopy | MSSGNAKIGHPAPNFKATAVMPDGQFKGLSLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
Parental | CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR |
CQVIGASVDSHFCHLAWINTPKKQGGL.PMNIPLVSDPK.TIAQDYGVLKADEGISFRGLFI.DDKGIL. | |
Retrocopy | CQVIGASVDSHFCHLAWINTPKKQGGLRPMNIPLVSDPKHTIAQDYGVLKADEGISFRGLFITDDKGILW |
Parental | QITV |
QITV | |
Retrocopy | QITV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 6 .85 RPM | 90 .97 RPM |
SRP017611_brain | 4 .05 RPM | 62 .40 RPM |
SRP017611_kidney | 37 .38 RPM | 572 .01 RPM |
SRP017611_liver | 9 .43 RPM | 149 .81 RPM |