RetrogeneDB ID: | retro_cfam_1313 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 29:28970197..28970593(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSCAFG00000004567 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris peroxiredoxin 1 (PRDX1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252165] |
Percent Identity: | 98.48 % |
Parental protein coverage: | 66.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKG |
.LNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK.DEGISFRGLFIIDDKG | |
Retrocopy | QLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKVDEGISFRGLFIIDDKG |
Parental | ILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK |
ILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK | |
Retrocopy | ILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 90 .97 RPM |
SRP017611_brain | 0 .16 RPM | 62 .40 RPM |
SRP017611_kidney | 0 .33 RPM | 572 .01 RPM |
SRP017611_liver | 0 .07 RPM | 149 .81 RPM |