RetrogeneDB ID: | retro_cfam_577 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 13:48346766..48347132(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000002200 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSCAFG00000004567 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris peroxiredoxin 1 (PRDX1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252165] |
Percent Identity: | 82.11 % |
Parental protein coverage: | 61.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVND |
S.D..FC.........KQGGLGPMNIPLVSDPK.T.AQ.YGVLKADEGI.FRGLFIID.KGIL.QITVND | |
Retrocopy | SSDWCFCGFSFLSPGMKQGGLGPMNIPLVSDPKHTTAQEYGVLKADEGILFRGLFIID-KGILWQITVND |
Parental | LPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK |
LPVG.SVDETL.LVQAFQFTDKHGE.CPAGWKPGSDTIKPD.QKSKEYFSKQK | |
Retrocopy | LPVGHSVDETLQLVQAFQFTDKHGELCPAGWKPGSDTIKPDAQKSKEYFSKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 90 .97 RPM |
SRP017611_brain | 0 .00 RPM | 62 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 572 .01 RPM |
SRP017611_liver | 0 .00 RPM | 149 .81 RPM |