Parental gene:

FAM204A, ENSCJAG00000019565

Aliases:None
Description:family with sequence similarity 204, member A [Source:HGNC Symbol;Acc:25794]
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:106088031..106121950(-)


>ENSCJAG00000019565
ATGTGGAGTGGGCTGCTACCTCCTGGCCTAAATGAAAGTGATGTTGAGTCAAACTCTGAAGATGAAGCTACGTTGGAGAA
CTCTGGACTGAACTTACAGGAAGATAAAGAGGATGGGAGCATCAGTAAAACAGAAATCACAGATTTCTCAACAGATGAAC
CAAAAACTGAAATGGAGTCAAATGTAAATGCCTATGAGGAGTGTCCTTCTGGAATTCCCATAGATATGTGGAATAAATTT
CAAGAATTGCATAAAAAACATTCTGAACAGAAAAACACAACCTCAAGATTCAGAGGGAAAAAAAGAAAACGCTCCAGAAA
AGATAAATTGAAGAATGAGAAAGAATCTCATAGTGAAGAGTCCTCAAATGAAACCCAGTGGAAGGAGCTTACTCAGTATT
TTGGAGTCAATGATAGATTTGACCCTCCTGTTAAAAGGAAAAAAGTTGAGAAGTCAGGCCTTGAAAAGAGGATAGACCAG
GCTGTGGATGAGTGGAATATTGAGAAGGCTGAGGAACTCAGCAACCACCTAGCTACTCGAGAGCTTGGTGTCAAAATTGC
CAAAGCAGTTGCCTGCCACAACTTTGTAAAAGCCAAAAAGGAGGTTGAAAATTCACAGGCTGCCCGAAAAAAGAAGAAAC
TCGCATGGGGGTTTGAAGCAAAGAAGAGATGGGAAACCAAAAGCAACATGGGATATATGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 25 .50 RPM
SRP051959_skeletal_muscle 18 .56 RPM
SRP051959_lymph_node 28 .77 RPM
SRP051959_lung 23 .18 RPM
SRP051959_liver 16 .57 RPM
SRP051959_kidney 30 .28 RPM
SRP051959_heart 22 .36 RPM
SRP051959_colon 14 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010199 ortholog_one2many 12 retrogenes
retro_chof_1296, retro_chof_1713, retro_chof_1977, retro_chof_2137, retro_chof_2367, retro_chof_2436, retro_chof_2558, retro_chof_2685, retro_chof_590, retro_chof_639, retro_chof_698, retro_chof_832,
Cavia porcellus ENSCPOG00000002747 ortholog_one2many 1 retrogene
retro_cpor_1356,
Dasypus novemcinctus ENSDNOG00000001383 ortholog_one2many 2 retrogenes
retro_dnov_138, retro_dnov_167,
Dipodomys ordii ENSDORG00000002074 ortholog_one2many 1 retrogene
retro_dord_413,
Echinops telfairi ENSETEG00000003855 ortholog_one2many 2 retrogenes
retro_etel_1021, retro_etel_944,
Homo sapiens ENSG00000165669 ortholog_one2one 1 retrogene
retro_hsap_491,
Gorilla gorilla ENSGGOG00000010566 ortholog_one2one 1 retrogene
retro_ggor_460,
Loxodonta africana ENSLAFG00000016774 ortholog_one2many 4 retrogenes
retro_lafr_1079, retro_lafr_332, retro_lafr_369, retro_lafr_923,
Macropus eugenii ENSMEUG00000002674 ortholog_one2many 1 retrogene
retro_meug_606,
Myotis lucifugus ENSMLUG00000027454 ortholog_many2many 1 retrogene
retro_mluc_29,
Macaca mulatta ENSMMUG00000012741 ortholog_one2one 1 retrogene
retro_mmul_722,
Monodelphis domestica ENSMODG00000009378 ortholog_many2many 3 retrogenes
retro_mdom_112, retro_mdom_1258, retro_mdom_38,
Mustela putorius furo ENSMPUG00000003239 ortholog_many2many 1 retrogene
retro_mputfur_1400,
Oryctolagus cuniculus ENSOCUG00000005150 ortholog_many2many 1 retrogene
retro_ocun_1487,
Otolemur garnettii ENSOGAG00000028541 ortholog_one2many 1 retrogene
retro_ogar_1610,
Procavia capensis ENSPCAG00000011501 ortholog_one2many 1 retrogene
retro_pcap_400,
Pongo abelii ENSPPYG00000002694 ortholog_one2one 1 retrogene
retro_pabe_242,
Pan troglodytes ENSPTRG00000002984 ortholog_one2one 1 retrogene
retro_ptro_370,
Pteropus vampyrus ENSPVAG00000004621 ortholog_one2many 2 retrogenes
retro_pvam_366, retro_pvam_776,
Sorex araneus ENSSARG00000000819 ortholog_one2many 3 retrogenes
retro_sara_258, retro_sara_323, retro_sara_541,
Sarcophilus harrisii ENSSHAG00000011601 ortholog_one2many 3 retrogenes
retro_shar_155, retro_shar_412, retro_shar_476,
Tarsius syrichta ENSTSYG00000009147 ortholog_one2many 1 retrogene
retro_tsyr_518,
Tursiops truncatus ENSTTRG00000003351 ortholog_one2many 1 retrogene
retro_ttru_1322,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3814 94.04 100.00
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Download FASTA sequences of all ENSCJAG00000019565 retrocopies