RetrogeneDB ID: | retro_ggor_460 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:177546917..177547612(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM204A | ||
Ensembl ID: | ENSGGOG00000010566 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.84 % |
Parental protein coverage: | 99.57 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MWSGLLPPGLNESDAESNSEDEATLENSGVNLQEDKEDESIRETEIVD-FSTDEPKTETESNVNAYEECP |
MWSGLLPPGLNESD.E.NSEDEATLENSG.NLQEDKED.SIR.TEI.D.FS.DEPKTETESNVNAYEECP | |
Retrocopy | MWSGLLPPGLNESDVE*NSEDEATLENSGLNLQEDKEDGSIRKTEIID<FSIDEPKTETESNVNAYEECP |
Parental | SGIPIDMWNKFQELHKKHSEQKSTTSRFRGKRRKRSRKDKLKKEKEFHSEPSSNETQWKELTQYFGVNDR |
SGIP.DM.N.F.ELHKKHSEQK..TSRFRGK.RKRSRKDKL..EKE.H.E..SNETQWKELTQYFGV.D. | |
Retrocopy | SGIPLDM*NIF*ELHKKHSEQKNATSRFRGKKRKRSRKDKLRNEKESHNEQFSNETQWKELTQYFGVSD* |
Parental | FDPPVKRKKVEKSGLEKRIDQAVEEWNIEKAEELSNQLATRELGVKIAKAVACHNFVKAKKEVENSQAAR |
F.P.VKRK.VEKSGLE.RIDQAVEEWNIEK.EEL.NQLATRELGVKIAKAVACHNFVKAKKEVENSQAA. | |
Retrocopy | FEPHVKRKNVEKSGLEERIDQAVEEWNIEKTEELRNQLATRELGVKIAKAVACHNFVKAKKEVENSQAAP |
Parental | KKKKLAWGFEAKKRWETKSNMGY |
KKKKLAW.FEAKKRWET.S.MGY | |
Retrocopy | KKKKLAWEFEAKKRWETQSDMGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 20 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 16 .59 RPM |
SRP007412_heart | 0 .03 RPM | 7 .41 RPM |
SRP007412_kidney | 0 .08 RPM | 22 .65 RPM |
SRP007412_liver | 0 .05 RPM | 14 .90 RPM |
SRP007412_testis | 0 .00 RPM | 56 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_491 |
Pan troglodytes | retro_ptro_370 |