RetrogeneDB ID: | retro_chof_2436 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_74925:8127..8746(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM204A | ||
Ensembl ID: | ENSCHOG00000010199 | ||
Aliases: | None | ||
Description: | family with sequence similarity 204, member A [Source:HGNC Symbol;Acc:25794] |
Percent Identity: | 80. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MWSGLLPPGLNESDVESNSEDEAIVENSGFNLQ-EDKEDQATRKSEISEFPTNGPKTETEANVNAYEECP |
MWSGLLP.GLNESDVESNS.DEA.VENSGFNLQ.EDKEDQ.TRKSEISEFPTNGPKTETEANVNAYEECP | |
Retrocopy | MWSGLLPLGLNESDVESNSKDEATVENSGFNLQ<EDKEDQTTRKSEISEFPTNGPKTETEANVNAYEECP |
Parental | SGISLNMWNKFQELHKKHSEQKNSASRFRRKKRKRSRKDKLNNGEASHSEHSPNEIQWKELTQYFGVNER |
SG.SL...N........H...K..ASRFRRKKRK.SRKDKLNN.E.S..EHSPNE.QWKE.T.YFGVN.R | |
Retrocopy | SGSSL---NMWNKFQELH--KKHYASRFRRKKRKHSRKDKLNNRETSY-EHSPNETQWKECTLYFGVNDR |
Parental | FDP-PVKKKKIEKSGLEKSIDQAVEEWNIEKAEELSNQLATRELGVKIAKAVACHNFVKAKKAAENSQVV |
FDP.PVK.KK.EKS.LE.S.DQAVEEW..EKA.ELSNQLAT.ELGVKIAKAV.CHNFVKAKKAAENSQVV | |
Retrocopy | FDP<PVKEKKTEKSVLETSTDQAVEEWITEKAKELSNQLATQELGVKIAKAVSCHNFVKAKKAAENSQVV |
Parental | RKKKK |
.KKKK | |
Retrocopy | WKKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |