RetrogeneDB ID: | retro_cpor_1356 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_71:3339237..3339590(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM204A | ||
Ensembl ID: | ENSCPOG00000002747 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.47 % |
Parental protein coverage: | 50.43 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | QSQQSLHENQWKELTQYFGANDRFEPPVKKKKV-EKSGLEKRIDQAVEEWDVEKAEELSNQLATRELGVK |
QS.QSL.E.Q.KELTQ.FGANDR.EP.VKKKKV.EKSG.EKRI.Q.VEEWDVE..EELSNQ.A..ELGVK | |
Retrocopy | QSDQSLNETQ*KELTQSFGANDRCEPSVKKKKV>EKSGFEKRIVQDVEEWDVEQTEELSNQVAI*ELGVK |
Parental | IAKAFACHKFVQAKKEIENSQAA-RKKKKLAWGFEAKKRWETKSNMGYM |
IAKA..CHKF..AKKE.EN.QAA...KKKL.WGFEAK.RWETKSN.GYM | |
Retrocopy | IAKAITCHKFLKAKKEVENVQAA>EIKKKLPWGFEAK*RWETKSNLGYM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .93 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .69 RPM |
SRP017611_liver | 0 .00 RPM | 13 .58 RPM |
SRP040447_lung | 0 .00 RPM | 14 .10 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 5 .22 RPM |