RetrogeneDB ID: | retro_pcap_400 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_68430:3666..4093(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM204A | ||
Ensembl ID: | ENSPCAG00000011501 | ||
Aliases: | None | ||
Description: | family with sequence similarity 204, member A [Source:HGNC Symbol;Acc:25794] |
Percent Identity: | 53.74 % |
Parental protein coverage: | 62.66 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MWSGLLPPGLNESDVELTSEDEATSENSRLDLQEAQEDQMTRKTEILDFPTDGPQTETEADVDAYEECPS |
M.S.LLPP.LN....EL.SED.ATS.N.RL.LQ.A..D....KT.I.DF..D.P....EA...AY.ECPS | |
Retrocopy | M*SMLLPPDLNKNNIELNSEDKATSQNFRLHLQKAK-DLIIKKTDISDFQMDEPKPK*EANLNAYKECPS |
Parental | GISKHMWNKFQDLRQKHVEQKSSSSGFRRKKRKRCRKGKLKKEET-SCSEQSSNETQWKELTQYFGVNDR |
.IS....NKF..LR.KH.EQK.S.S...R..........LK..E..S.S.QSSNE.QWK.LTQYFGVN.R | |
Retrocopy | RISLNT*NKFLELRRKHSEQKTSTS---RVRMEK*KLQELKNKEV>SHSKQSSNEAQWKQLTQYFGVNSR |
Parental | FDPPVKK |
FD.PV.. | |
Retrocopy | FDYPVRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |