RetrogeneDB ID: | retro_mdom_1258 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 4:148433686..148434271(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000009378 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.61 % |
Parental protein coverage: | 84.26 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | SDIELSSEDETTVKISELSSKEDKGDDVT-GEVRLPVFHTGGPKNGAETDTKNADEACPSGVPLNMWN-K |
S..EL.S.D.TT.K.SEL.SKE.K.D.V...E..L..FHT.G.KNG.E....NAD....S..P.NMW... | |
Retrocopy | SNNELNSKDVTTLKFSELKSKENKEDGVN>EEAGLYGFHTDGCKNGTE---ENADK*NSSSAPINMWSIS |
Parental | FQELHK-KHSELRTVTNSRSRRTKRKRPRKDKLKN-NEESGSQQSSNEAQWKELTQYFGINDKFEPLI-S |
F....K.KH.EL.T.T.S.S...KRK.PRK.KLKN..E....Q.SSNEAQWK.LT.YF.I.DK.E.LI.S | |
Retrocopy | FKNYIK<KH*ELKT*TISTSTESKRKCPRKGKLKN>KEADSQQ-SSNEAQWKQLTRYFQIKDKHEILI<S |
Parental | NRELLKSGLEVSIDKSVAEGDIEKAEELSNRLATRELGVKIAKAVACRNFVKAKKDAETSQEA |
N..L..S.LE.SIDKSVAEGD.EKA.ELSNRL.TREL..KIAKAV.C.NFVK..KDA.TS..A | |
Retrocopy | NTDLQRSDLEASIDKSVAEGDNEKAKELSNRLGTRELLIKIAKAVTCSNFVKVVKDASTSKKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 12 .99 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .59 RPM |
SRP007412_heart | 0 .00 RPM | 9 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .53 RPM |
SRP007412_liver | 0 .00 RPM | 5 .54 RPM |
SRP007412_testis | 0 .00 RPM | 46 .36 RPM |