RetrogeneDB ID: | retro_chof_1296 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_253828:851..1486(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM204A | ||
Ensembl ID: | ENSCHOG00000010199 | ||
Aliases: | None | ||
Description: | family with sequence similarity 204, member A [Source:HGNC Symbol;Acc:25794] |
Percent Identity: | 84.72 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MWSGLLPPGLNESDVESNSEDEAIVENSGFNLQEDKEDQATRKSEISEFPTNG-PKTETEANVNAYEECP |
MW.GLLPPGLNESDVESNSE.EA.VENS.FNLQEDKEDQ.T.KSEISEFPTNG.PK...E.N.NAYEECP | |
Retrocopy | MWCGLLPPGLNESDVESNSEGEATVENSEFNLQEDKEDQVTGKSEISEFPTNG>PKLK-EVNINAYEECP |
Parental | -SGISLNMWNKFQELHKKHSEQKNSASRFRRKKRKRSRKDKLNNGEASHSEHSPNEIQWKELTQYFGVNE |
..GISLNM.NKFQELHKKHSEQ.NSASRFRRKKRK.SRKDKLNNGE.SHSEHSPNEIQWKELTQYFGVNE | |
Retrocopy | <AGISLNMRNKFQELHKKHSEQENSASRFRRKKRKHSRKDKLNNGETSHSEHSPNEIQWKELTQYFGVNE |
Parental | RFDPPVKKKKIEKSGLEKSIDQAVEEWNIEKAEELSNQLATRELGVKIAKAVACHNFVKAKKAAE-NSQV |
RFDPP......EKSGLEKSI.QA.EE..IEKAEEL.NQLATRE.GVKIAKAVAC.N.VKAKKAAE.NSQV | |
Retrocopy | RFDPPXXXXXXEKSGLEKSIEQALEEGIIEKAEELGNQLATREPGVKIAKAVACRNLVKAKKAAE<NSQV |
Parental | VRKKKK |
VRKKKK | |
Retrocopy | VRKKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |