RetrogeneDB ID: | retro_sara_258 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_134952:440..970(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM204A | ||
Ensembl ID: | ENSSARG00000000819 | ||
Aliases: | None | ||
Description: | family with sequence similarity 204, member A [Source:HGNC Symbol;Acc:25794] |
Percent Identity: | 74.16 % |
Parental protein coverage: | 75.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MWSGLLPPGLNESDTELESE-DEDTSESSEPNLQEDKVDDVTKRNTEISACPPDGPQTTPETTVNAYKEC |
M.S.L.PPG.NESDTEL.S...E.TSES..PNLQEDKVDD.TKRNTEIS.CPPDGP.T.PE..VNAYKEC | |
Retrocopy | M*SRLFPPGQNESDTELGSK<SEATSESAGPNLQEDKVDDGTKRNTEISDCPPDGPKTAPEANVNAYKEC |
Parental | PSGISLAMWEKFQELHKRNSE-QTAANSRFRRKRRKRSRKGKLNNEEESESGQPSKEDEWKELTQYFGIN |
PSGISL..W..FQEL....SE.QTAA.SRF.RKRRK.SRKGKLNNEEES..G.PSK.DEWKELTQYFGIN | |
Retrocopy | PSGISLTIWKTFQELYXXXSEFQTAAGSRFIRKRRKHSRKGKLNNEEESQNGLPSKKDEWKELTQYFGIN |
Parental | ERFDPPVKRKKVEKSGLEKRIDQAVDDWDIEKAEELSN |
ERFDP.V..KKVEKS.LEK..DQA.DD.DIE....L.N | |
Retrocopy | ERFDPTVEKKKVEKSCLEKHVDQAMDDRDIENLRMLRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |