RetrogeneDB ID: | retro_pvam_366 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_276:86165..86581(-) | ||
Located in intron of: | ENSPVAG00000006871 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM204A | ||
Ensembl ID: | ENSPVAG00000004621 | ||
Aliases: | None | ||
Description: | family with sequence similarity 204, member A [Source:HGNC Symbol;Acc:25794] |
Percent Identity: | 56.25 % |
Parental protein coverage: | 59.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LDLKEDKEDGTITK-TELSDFPKDGPKTEAESNLNAYEECPSGIPLHMWNKFQELHKKHS-EQKISSSRF |
L.L...K.DGTITK..E.SDFP.DGPKTEAE.N...YEECPS.I.LHM.NKFQELHKKHS...KI..SRF | |
Retrocopy | LNLQKEK-DGTITK>SEISDFPSDGPKTEAEVNVTEYEECPSEITLHM*NKFQELHKKHS<HRKILTSRF |
Parental | RKKRKRSKKGKLK--NEEESHSEQTSSQTQWKELTQYFGVNDRFEPPVKKKNIDKSGLEKS-IDQAVEEW |
..........K.K..NEEES.SE..SS.TQWKEL...........P..K.K......L....IDQA.EEW | |
Retrocopy | XXXXXXXXPRKGKLKNEEESQSEESSSKTQWKEL-RILESKTGLNPLLKIKILTIQALKRT<IDQAMEEW |
Parental | NIEK |
NIEK | |
Retrocopy | NIEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |