Parental gene:

RPS25, ENSECAG00000020978

Aliases:None
Description:ribosomal protein S25 [Source:HGNC Symbol;Acc:10413]
Organism:Horse (Equus caballus)
Coordinates:7:26726079..26727848(-)


>ENSECAG00000020978
GGCTGCAGTGGTGATAGCTGCTGTCCGAGCTTCGCGATGCCGCCCAAGGACGACAAGAAGAAGAAAGATGCCGGAAAGTC
GGCCAAGAAAGACAAAGACCCAGTGAACAAATCTGGGGGCAAAGCCAAAAAGAAGAAGTGGTCCAAAGGCAAAGTTCGGG
ACAAGCTCAATAACCTAGTCTTGTTTGACAAAGCGACATATGACAAACTGTGTAAGGAAGTGCCCAACTATAAGCTTATA
ACCCCAGCTGTTGTCTCAGAGAGACTGAAGATTCGCGGTTCCCTGGCCAGGGCAGCCCTTCAGGAGCTCCTTAGTAAAGG
ACTTATTAAACTGGTTTCAAAGCACAGAGCTCAAGTAATTTATACCAGAAACACGAAAGGCGGAGATGCCCCAGCGGCTG
GTGAAGATGCATGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 336 .29 RPM
SRP021940_cerebellum 135 .28 RPM
SRP021940_embryo 214 .22 RPM
SRP021940_placental_villous 178 .73 RPM
SRP021940_synovial_membrane 195 .60 RPM
SRP021940_testis 156 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000027772 possible_ortholog 2 retrogenes
retro_btau_203, retro_btau_9,
Callithrix jacchus ENSCJAG00000013691 possible_ortholog 1 retrogene
retro_cjac_208,
Dasypus novemcinctus ENSDNOG00000007880 ortholog_one2many 7 retrogenes
retro_dnov_1092, retro_dnov_1566, retro_dnov_2219, retro_dnov_2593, retro_dnov_346, retro_dnov_877, retro_dnov_973,
Erinaceus europaeus ENSEEUG00000014630 ortholog_one2one 6 retrogenes
retro_eeur_250, retro_eeur_281, retro_eeur_353, retro_eeur_424, retro_eeur_519, retro_eeur_675,
Latimeria chalumnae ENSLACG00000017531 possible_ortholog 4 retrogenes
retro_lcha_101, retro_lcha_118, retro_lcha_50, retro_lcha_72,
Macropus eugenii ENSMEUG00000014185 possible_ortholog 3 retrogenes
retro_meug_1181, retro_meug_1562, retro_meug_174,
Mus musculus ENSMUSG00000009927 possible_ortholog 15 retrogenes
retro_mmus_128, retro_mmus_1368, retro_mmus_1455, retro_mmus_1760, retro_mmus_1769, retro_mmus_1788, retro_mmus_2375, retro_mmus_2393, retro_mmus_2641, retro_mmus_2700, retro_mmus_2797, retro_mmus_3218, retro_mmus_336, retro_mmus_3523, retro_mmus_880,
Otolemur garnettii ENSOGAG00000007265 ortholog_one2one 3 retrogenes
retro_ogar_220, retro_ogar_257, retro_ogar_32,
Ochotona princeps ENSOPRG00000016194 possible_ortholog 9 retrogenes
retro_opri_1099, retro_opri_1204, retro_opri_256, retro_opri_320, retro_opri_393, retro_opri_493, retro_opri_64, retro_opri_854, retro_opri_873,
Vicugna pacos ENSVPAG00000000266 possible_ortholog 4 retrogenes
retro_vpac_106, retro_vpac_118, retro_vpac_337, retro_vpac_546,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_89 86.86 100.00
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2. retro_ecab_976 71.43 91.97
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Download FASTA sequences of all ENSECAG00000020978 retrocopies