RetrogeneDB ID: | retro_ecab_89 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 12:1795917..1796331(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000006372 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS25 | ||
Ensembl ID: | ENSECAG00000020978 | ||
Aliases: | None | ||
Description: | ribosomal protein S25 [Source:HGNC Symbol;Acc:10413] |
Percent Identity: | 86.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GCSGDSCCPSFAMPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKL |
GCSG.....SF.MPPKD.KKKKDAGKSAKKDKDPVNKSGGKA.KKKWSKGKV.DKLNNLVLFDKATYDK. | |
Retrocopy | GCSGNRFSLSFVMPPKDNKKKKDAGKSAKKDKDPVNKSGGKATKKKWSKGKVQDKLNNLVLFDKATYDKP |
Parental | CKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
C.EVP.YKLI.PAVVSER.KIRGSLARA.LQELLSKG..KLVSKHRAQVIYTRNTKGGDAPAAGE.A | |
Retrocopy | CNEVPRYKLISPAVVSERMKIRGSLARATLQELLSKGRLKLVSKHRAQVIYTRNTKGGDAPAAGEGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 336 .29 RPM |
SRP021940_cerebellum | 0 .00 RPM | 135 .28 RPM |
SRP021940_embryo | 0 .18 RPM | 214 .22 RPM |
SRP021940_placental_villous | 0 .05 RPM | 178 .73 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 195 .60 RPM |
SRP021940_testis | 0 .06 RPM | 156 .85 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000027772 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000013691 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007880 | 7 retrocopies | |
Equus caballus | ENSECAG00000020978 | 2 retrocopies |
retro_ecab_89 , retro_ecab_976,
|
Erinaceus europaeus | ENSEEUG00000014630 | 6 retrocopies | |
Latimeria chalumnae | ENSLACG00000017531 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000014185 | 3 retrocopies | |
Mus musculus | ENSMUSG00000009927 | 15 retrocopies | |
Otolemur garnettii | ENSOGAG00000007265 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000016194 | 9 retrocopies | |
Vicugna pacos | ENSVPAG00000000266 | 4 retrocopies |