Parental gene: | H3F3B, ENSG00000132475 |
| Aliases: | H3F3B, H3.3B |
| Description: | H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 17:73772514..73781974(-) |
>ENSG00000132475
ATGGCCCGAACCAAGCAGACTGCTCGTAAGTCCACCGGTGGGAAAGCCCCCCGCAAACAGCTGGCCACGAAAGCCGCCAG
GAAAAGCGCTCCCTCTACCGGCGGGGTGAAGAAGCCTCATCGCTACAGGCCCGGGACCGTGGCGCTTCGAGAGATTCGTC
GTTATCAGAAGTCGACCGAGCTGCTCATCCGGAAGCTGCCCTTCCAGAGGTTGGTGAGGGAGATCGCGCAGGATTTCAAA
ACCGACCTGAGGTTTCAGAGCGCAGCCATCGGTGCGCTGCAGGAGGCTAGCGAAGCGTACCTGGTGGGTCTGTTCGAAGA
TACCAACCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGAG
AGAGAGCTTAA
ATGGCCCGAACCAAGCAGACTGCTCGTAAGTCCACCGGTGGGAAAGCCCCCCGCAAACAGCTGGCCACGAAAGCCGCCAG
GAAAAGCGCTCCCTCTACCGGCGGGGTGAAGAAGCCTCATCGCTACAGGCCCGGGACCGTGGCGCTTCGAGAGATTCGTC
GTTATCAGAAGTCGACCGAGCTGCTCATCCGGAAGCTGCCCTTCCAGAGGTTGGTGAGGGAGATCGCGCAGGATTTCAAA
ACCGACCTGAGGTTTCAGAGCGCAGCCATCGGTGCGCTGCAGGAGGCTAGCGAAGCGTACCTGGTGGGTCTGTTCGAAGA
TACCAACCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGAG
AGAGAGCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 114 .76 RPM |
| bodymap2_lung | 619 .46 RPM |
| bodymap2_breast | 323 .45 RPM |
| bodymap2_adipose | 358 .42 RPM |
| bodymap2_adrenal | 566 .78 RPM |
| bodymap2_skeletal_muscle | 113 .47 RPM |
| bodymap2_thyroid | 1081 .08 RPM |
| bodymap2_prostate | 568 .46 RPM |
| bodymap2_colon | 361 .41 RPM |
| bodymap2_testis | 496 .18 RPM |
| bodymap2_brain | 541 .14 RPM |
| bodymap2_heart | 91 .05 RPM |
| bodymap2_white_blood_cells | 627 .57 RPM |
| bodymap2_lymph_node | 265 .57 RPM |
| bodymap2_ovary | 1184 .97 RPM |
| bodymap2_kidney | 326 .19 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000012702 | possible_ortholog | 10 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000024843 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000006904 | possible_ortholog | 1 retrogene | |
| Equus caballus | ENSECAG00000016948 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000163041 | within_species_paralog | 5 retrogenes | |
| Latimeria chalumnae | ENSLACG00000004118 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000008083 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000002139 | possible_ortholog | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000004555 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000008636 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_24 | 95.59 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_389 | 76.64 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_911 | 67.77 | 86.76 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_1212 | 95.56 | 99.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_1552 | 78.49 | 66.91 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_2180 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_2971 | 91.91 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_hsap_3231 | 83.45 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_hsap_3294 | 82.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_hsap_3299 | 82.09 | 98.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_hsap_4236 | 73.39 | 91.18 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000132475 retrocopies