RetrogeneDB ID: | retro_dnov_1624 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_24899:6280..6628(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3B | ||
Ensembl ID: | ENSDNOG00000024843 | ||
Aliases: | None | ||
Description: | H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765] |
Percent Identity: | 85.34 % |
Parental protein coverage: | 85.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAA |
QLAT.A.R.SAPS.GGVKKPHRYRPGTVALREIRRYQ.STELLI.KLPF.RLVRE.AQ..KTDLRFQSAA | |
Retrocopy | QLATRAVRRSAPSAGGVKKPHRYRPGTVALREIRRYQMSTELLIGKLPF*RLVRETAQYLKTDLRFQSAA |
Parental | IGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER |
IGALQEASEAYLV..FEDT.LCAI.AKRVTIMPKD.QLARR..GER | |
Retrocopy | IGALQEASEAYLVDIFEDTSLCAILAKRVTIMPKDSQLARRTHGER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 379 .21 RPM |
SRP012922_cerebellum | 0 .41 RPM | 285 .66 RPM |
SRP012922_heart | 0 .00 RPM | 37 .36 RPM |
SRP012922_kidney | 0 .00 RPM | 136 .90 RPM |
SRP012922_liver | 0 .00 RPM | 169 .05 RPM |
SRP012922_lung | 0 .61 RPM | 393 .88 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 46 .91 RPM |
SRP012922_spleen | 0 .34 RPM | 426 .60 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012702 | 10 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024843 | 2 retrocopies |
retro_dnov_1624 , retro_dnov_775,
|
Equus caballus | ENSECAG00000006904 | 1 retrocopy | |
Equus caballus | ENSECAG00000016948 | 1 retrocopy | |
Homo sapiens | ENSG00000132475 | 11 retrocopies | |
Latimeria chalumnae | ENSLACG00000004118 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008083 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000002139 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004555 | 4 retrocopies | |
Oreochromis niloticus | ENSONIG00000019975 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000008636 | 1 retrocopy |